{ "type": "genome", "identifier": "GCF_016862235.1", "organism": "Actinoplanes italicus", "title": "Actinoplanes italicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862235.1", "bioproject": "PRJNA224116", "biosample": "SAMD00229068", "wgs_master": "BOMO00000000.1", "refseq_category": "reference genome", "taxid": "113567", "species_taxid": "113567", "organism_name": "Actinoplanes italicus", "infraspecific_name": "strain=NBRC 13911", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686223v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/235/GCF_016862235.1_ASM1686223v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11098820", "genome_size_ungapped": "11098820", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "232", "contig_count": "232", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862235.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "10233", "protein_coding_gene_count": "10004", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes italicus" ], "sample_taxid": [ "113567" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy:Pontelongo" ], "sample_host_location_id": [], "data_size": "2.999 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11098820", "Number of Sequences": "232", "Longest Sequences (bp)": "408663", "N50 (bp)": "88681", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "10147", "Average Protein Length": "324.9", "Coding Ratio (%)": "89.1", "Number of rRNAs": "1", "Number of tRNAs": "108", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes italicus", "strain": "strain=NBRC 13911", "accession": "GCA_016862235.1", "taxid": 113567, "species_taxid": 113567, 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86.1954, "matched_fragments": 2359, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes xinjiangensis", "strain": "strain=DSM 45184", "accession": "GCA_003148685.1", "taxid": 512350, "species_taxid": 512350, "relation_to_type": "type", "validated": true, "ani": 86.1718, "matched_fragments": 2437, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=JCM 3059", "accession": "GCA_014647795.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 85.0192, "matched_fragments": 2138, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 85.009, "matched_fragments": 2108, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes utahensis", "strain": "strain=NBRC 13244", "accession": "GCA_016862455.1", "taxid": 1869, "species_taxid": 1869, "relation_to_type": "type", "validated": true, "ani": 84.9827, "matched_fragments": 2073, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=NBRC 12511", "accession": "GCA_016862035.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 84.9702, "matched_fragments": 2149, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 84.7959, "matched_fragments": 2155, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes derwentensis", "strain": "strain=NBRC 14935", "accession": "GCA_016862135.1", "taxid": 113562, "species_taxid": 113562, "relation_to_type": "type", "validated": true, "ani": 83.7614, "matched_fragments": 2013, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes derwentensis", "strain": "strain=DSM 43941", "accession": "GCA_900104725.1", "taxid": 113562, "species_taxid": 113562, "relation_to_type": "type", "validated": true, "ani": 83.7155, "matched_fragments": 2070, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes cyaneus", "strain": "strain=NBRC 14990", "accession": "GCA_016862095.1", "taxid": 52696, "species_taxid": 52696, "relation_to_type": "type", "validated": true, "ani": 81.8833, "matched_fragments": 1819, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 77.4361, "matched_fragments": 1409, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.3429, "matched_fragments": 1149, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea californiensis", "strain": "strain=DSM 43393", "accession": "GCA_024648825.1", "taxid": 438851, "species_taxid": 438851, "relation_to_type": "type", "validated": true, "ani": 76.5012, "matched_fragments": 714, "total_fragments": 3577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea tibetensis", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinoplanes", "italicus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }