{ "type": "genome", "identifier": "GCF_016862335.1", "organism": "Actinoplanes philippinensis", "title": "Actinoplanes philippinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862335.1", "bioproject": "PRJNA224116", "biosample": "SAMD00229073", "wgs_master": "BOMT00000000.1", "refseq_category": "na", "taxid": "35752", "species_taxid": "35752", "organism_name": "Actinoplanes philippinensis", "infraspecific_name": "strain=NBRC 13878", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686233v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/335/GCF_016862335.1_ASM1686233v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10361084", "genome_size_ungapped": "10361084", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "148", "contig_count": "148", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862335.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "9509", "protein_coding_gene_count": "9303", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes philippinensis" ], "sample_taxid": [ "35752" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Philippines" ], "sample_host_location_id": [], "data_size": "2.775 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10361084", "Number of Sequences": "148", "Longest Sequences (bp)": "381971", "N50 (bp)": "179343", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.5", "Number of CDSs": "9470", "Average Protein Length": "327.3", "Coding Ratio (%)": "89.7", "Number of rRNAs": "1", "Number of tRNAs": "95", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes philippinensis", "strain": "strain=NBRC 13878", "accession": "GCA_016862335.1", "taxid": 35752, "species_taxid": 35752, 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86.2324, "matched_fragments": 2375, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=DSM 43146", "accession": "GCA_003001815.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 86.1952, "matched_fragments": 2407, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=NBRC 12513", "accession": "GCA_016862255.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 85.1182, "matched_fragments": 2075, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 85.0985, "matched_fragments": 2031, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=NBRC 12511", "accession": "GCA_016862035.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 85.0424, "matched_fragments": 2100, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 84.9717, "matched_fragments": 2074, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=DSM 45809", "accession": "GCA_014205225.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 82.5066, "matched_fragments": 1966, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=NBRC 14524", "accession": "GCA_016862295.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 82.4884, "matched_fragments": 1948, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 77.4581, "matched_fragments": 1488, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium roseum", "strain": "strain=NRRL B-16295", "accession": "GCA_025264685.1", "taxid": 47989, "species_taxid": 47989, "relation_to_type": "type", "validated": true, "ani": 77.3315, "matched_fragments": 1000, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.2815, "matched_fragments": 1196, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.1928, "matched_fragments": 1316, "total_fragments": 3378, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900113015.1", "gtdb_species": "s__Actinoplanes philippinensis", "ani": 99.9967, "matched_fragments": 3371, "total_fragments": 3378, "gtdb_taxonomy": 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