{
    "type": "genome",
    "identifier": "GCF_016862355.1",
    "organism": "Actinoplanes regularis",
    "title": "Actinoplanes regularis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016862355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00230162",
        "wgs_master": "BOMU00000000.1",
        "refseq_category": "na",
        "taxid": "52697",
        "species_taxid": "52697",
        "organism_name": "Actinoplanes regularis",
        "infraspecific_name": "strain=NBRC 12514",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/29",
        "asm_name": "ASM1686235v1",
        "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)",
        "gbrs_paired_asm": "GCA_016862355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/355/GCF_016862355.1_ASM1686235v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9968044",
        "genome_size_ungapped": "9968044",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "185",
        "contig_count": "185",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016862355.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "9131",
        "protein_coding_gene_count": "8920",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-29",
    "dateModified": "2021-01-29",
    "datePublished": "2021-01-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinoplanes regularis"
        ],
        "sample_taxid": [
            "52697"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Wisconsin, Madison, University of Wisconsin"
        ],
        "sample_host_location_id": [],
        "data_size": "2.696 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9968044",
        "Number of Sequences": "185",
        "Longest Sequences (bp)": "549973",
        "N50 (bp)": "113804",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.4",
        "Number of CDSs": "9015",
        "Average Protein Length": "323.6",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "111",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinoplanes regularis",
                "strain": "strain=NBRC 12514",
                "accession": "GCA_016862355.1",
                "taxid": 52697,
                "species_taxid": 52697,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3229,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinoplanes regularis",
                "strain": "strain=DSM 43151",
                "accession": "GCA_900188005.1",
                "taxid": 52697,
                "species_taxid": 52697,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9979,
                "matched_fragments": 3228,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinoplanes teichomyceticus",
                "strain": "strain=NBRC 13999",
                "accession": "GCA_016862415.1",
                "taxid": 1867,
                "species_taxid": 1867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8297,
                "matched_fragments": 1741,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes octamycinicus",
                "strain": "strain=DSM 45809",
                "accession": "GCA_014205225.1",
                "taxid": 135948,
                "species_taxid": 135948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7806,
                "matched_fragments": 2054,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes octamycinicus",
                "strain": "strain=NBRC 14524",
                "accession": "GCA_016862295.1",
                "taxid": 135948,
                "species_taxid": 135948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7312,
                "matched_fragments": 2011,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes teichomyceticus",
                "strain": "strain=DSM 43866",
                "accession": "GCA_007829915.1",
                "taxid": 1867,
                "species_taxid": 1867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6943,
                "matched_fragments": 1807,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes teichomyceticus",
                "strain": "strain=ATCC 31121",
                "accession": "GCA_003711105.1",
                "taxid": 1867,
                "species_taxid": 1867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6892,
                "matched_fragments": 1815,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes ianthinogenes",
                "strain": "strain=NBRC 13996",
                "accession": "GCA_018324205.1",
                "taxid": 122358,
                "species_taxid": 122358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6425,
                "matched_fragments": 2040,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes flavus",
                "strain": "strain=NEAU-H7",
                "accession": "GCA_017592555.1",
                "taxid": 2820290,
                "species_taxid": 2820290,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6904,
                "matched_fragments": 1793,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora phytophila",
                "strain": "strain=DSM 105363",
                "accession": "GCA_023656545.1",
                "taxid": 709888,
                "species_taxid": 709888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0208,
                "matched_fragments": 849,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora ferruginea",
                "strain": "strain=28ISP2-46",
                "accession": "GCA_013694245.1",
                "taxid": 2749844,
                "species_taxid": 2749844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9086,
                "matched_fragments": 1133,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora acroterricola",
                "strain": "strain=5R2A7",
                "accession": "GCA_003172955.1",
                "taxid": 2202421,
                "species_taxid": 2202421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8587,
                "matched_fragments": 928,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora humida",
                "strain": "strain=MMS20-R1-14",
                "accession": "GCA_016901255.1",
                "taxid": 2809018,
                "species_taxid": 2809018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7702,
                "matched_fragments": 1066,
                "total_fragments": 3233,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900188005.1",
                "gtdb_species": "s__Actinoplanes regularis",
                "ani": 99.9979,
                "matched_fragments": 3228,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016862395.1",
                "gtdb_species": "s__Actinoplanes siamensis",
                "ani": 86.1176,
                "matched_fragments": 1821,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014205225.1",
                "gtdb_species": "s__Actinoplanes octamycinicus",
                "ani": 85.806,
                "matched_fragments": 2049,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003711105.1",
                "gtdb_species": "s__Actinoplanes teichomyceticus",
                "ani": 85.6931,
                "matched_fragments": 1814,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_018324205.1",
                "gtdb_species": "s__Actinoplanes ianthinogenes",
                "ani": 85.6419,
                "matched_fragments": 2041,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016862315.1",
                "gtdb_species": "s__Actinoplanes palleronii",
                "ani": 85.553,
                "matched_fragments": 2079,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000715855.1",
                "gtdb_species": "s__Actinoplanes liguriensis",
                "ani": 85.4094,
                "matched_fragments": 2126,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016862095.1",
                "gtdb_species": "s__Actinoplanes cyaneus",
                "ani": 85.2727,
                "matched_fragments": 2058,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900119315.1",
                "gtdb_species": "s__Actinoplanes sp900119315",
                "ani": 84.7918,
                "matched_fragments": 1883,
                "total_fragments": 3233,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.194,
        "doubling_h": null,
        "growth_tmp": 27.5,
        "optimum_tmp": 27.203,
        "optimum_ph": 7.5,
        "genome_size": 10031706.0,
        "gc_content": 70.815,
        "coding_genes": 8199.833,
        "rRNA16S_genes": 4.5,
        "tRNA_genes": 63.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.857,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.666,
        "coccobacillus_cell_shape": 0.333,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Actinoplanes",
        "regularis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}