{ "type": "genome", "identifier": "GCF_016862475.1", "organism": "Actinoplanes xinjiangensis", "title": "Actinoplanes xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862475.1", "bioproject": "PRJNA224116", "biosample": "SAMD00230168", "wgs_master": "BONA00000000.1", "refseq_category": "reference genome", "taxid": "512350", "species_taxid": "512350", "organism_name": "Actinoplanes xinjiangensis", "infraspecific_name": "strain=NBRC 106528", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686247v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/475/GCF_016862475.1_ASM1686247v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10771015", "genome_size_ungapped": "10771015", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "166", "contig_count": "166", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862475.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "9804", "protein_coding_gene_count": "9578", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes xinjiangensis" ], "sample_taxid": [ "512350" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang Province" ], "sample_host_location_id": [], "data_size": "2.902 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10771015", "Number of Sequences": "166", "Longest Sequences (bp)": "496943", "N50 (bp)": "119358", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "9772", "Average Protein Length": "325.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "2", "Number of tRNAs": "108", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes xinjiangensis", "strain": "strain=DSM 45184", "accession": "GCA_003148685.1", "taxid": 512350, 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3505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes derwentensis", "strain": "strain=DSM 43941", "accession": "GCA_900104725.1", "taxid": 113562, "species_taxid": 113562, "relation_to_type": "type", "validated": true, "ani": 84.1329, "matched_fragments": 2137, "total_fragments": 3505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes missouriensis", "strain": "strain=431", "accession": "GCA_000284295.1", "taxid": 1866, "species_taxid": 1866, "relation_to_type": "type", "validated": true, "ani": 82.9434, "matched_fragments": 1871, "total_fragments": 3505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lutulentus", "strain": "strain=CGMCC 4.7090", "accession": "GCA_003259845.1", "taxid": 1287878, "species_taxid": 1287878, "relation_to_type": "type", "validated": true, "ani": 82.5471, "matched_fragments": 1880, "total_fragments": 3505, "ani_threshold": 95, "status": 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"Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.2888, "matched_fragments": 1079, "total_fragments": 3505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.1138, "matched_fragments": 1227, "total_fragments": 3505, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003148685.1", "gtdb_species": "s__Actinoplanes xinjiangensis", "ani": 99.9989, "matched_fragments": 3498, "total_fragments": 3505, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinoplanes", "xinjiangensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }