{ "type": "genome", "identifier": "GCF_016862675.1", "organism": "Cellulomonas chitinilytica", "title": "Cellulomonas chitinilytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862675.1", "bioproject": "PRJNA224116", "biosample": "SAMD00230178", "wgs_master": "BONK00000000.1", "refseq_category": "reference genome", "taxid": "398759", "species_taxid": "398759", "organism_name": "Cellulomonas chitinilytica", "infraspecific_name": "strain=NBRC 110799", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686267v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/675/GCF_016862675.1_ASM1686267v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4900124", "genome_size_ungapped": "4900124", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862675.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4541", "protein_coding_gene_count": "4470", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas chitinilytica" ], "sample_taxid": [ "398759" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Daejeon" ], "sample_host_location_id": [], "data_size": "1.279 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4900124", "Number of Sequences": "45", "Longest Sequences (bp)": "549494", "N50 (bp)": "251661", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.5", "Number of CDSs": "4480", "Average Protein Length": "332.1", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 83.3111, "matched_fragments": 867, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 82.9689, "matched_fragments": 965, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 82.8807, "matched_fragments": 989, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas terrae", "strain": "strain=NBRC 100819", "accession": "GCA_007990265.1", "taxid": 311234, "species_taxid": 311234, "relation_to_type": "type", "validated": true, "ani": 82.3425, "matched_fragments": 893, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas rhizosphaerae", "strain": "strain=NEAU-TCZ24", "accession": "GCA_003470205.1", "taxid": 2293719, "species_taxid": 2293719, "relation_to_type": "type", "validated": true, "ani": 82.1643, "matched_fragments": 739, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas humilata", "strain": "strain=ATCC 25174", "accession": "GCA_013359775.1", "taxid": 144055, "species_taxid": 144055, "relation_to_type": "type", "validated": true, "ani": 81.9652, "matched_fragments": 930, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas xylanilytica", "strain": "strain=NBRC 101102", "accession": "GCA_007989805.1", "taxid": 233583, "species_taxid": 233583, "relation_to_type": "type", "validated": true, "ani": 81.8304, "matched_fragments": 928, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 81.556, "matched_fragments": 833, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 81.5374, "matched_fragments": 774, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas persica", "strain": "strain=NBRC 101101", "accession": "GCA_007989825.1", "taxid": 76861, "species_taxid": 76861, "relation_to_type": "type", "validated": true, "ani": 81.3284, "matched_fragments": 795, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 81.2212, "matched_fragments": 780, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 81.0632, "matched_fragments": 788, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas oligotrophica", "strain": "strain=DSM 24482", "accession": "GCA_013409875.1", "taxid": 931536, "species_taxid": 931536, "relation_to_type": "type", "validated": true, "ani": 80.6073, "matched_fragments": 808, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 80.4221, "matched_fragments": 764, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 79.4187, "matched_fragments": 711, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 78.889, "matched_fragments": 608, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016862675.1", "gtdb_species": "s__Cellulomonas chitinilytica", "ani": 100.0, "matched_fragments": 1611, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017744555.1", "gtdb_species": "s__Cellulomonas sp017744555", "ani": 89.0958, "matched_fragments": 1127, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012396155.1", "gtdb_species": "s__Cellulomonas septica", "ani": 83.8763, "matched_fragments": 580, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004306155.1", "gtdb_species": "s__Cellulomonas biazotea", "ani": 83.3806, "matched_fragments": 861, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003851725.1", "gtdb_species": "s__Cellulomonas algicola", "ani": 83.3209, "matched_fragments": 884, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "95.68", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000212695.1", "gtdb_species": "s__Cellulomonas fimi", "ani": 82.9504, "matched_fragments": 981, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_007990265.1", "gtdb_species": "s__Cellulomonas terrae", "ani": 82.3453, "matched_fragments": 893, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003470205.1", "gtdb_species": "s__Cellulomonas rhizosphaerae", "ani": 82.1569, "matched_fragments": 740, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001426705.1", "gtdb_species": "s__Cellulomonas sp001426705", "ani": 82.1223, "matched_fragments": 964, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001424125.1", "gtdb_species": "s__Cellulomonas sp001424125", "ani": 82.0314, "matched_fragments": 857, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001424195.1", "gtdb_species": "s__Cellulomonas sp001424195", "ani": 82.0279, "matched_fragments": 937, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007989805.1", "gtdb_species": "s__Cellulomonas xylanilytica", "ani": 81.8412, "matched_fragments": 925, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000426185.1", "gtdb_species": "s__Cellulomonas sp000426185", "ani": 81.2036, "matched_fragments": 818, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013409305.1", "gtdb_species": "s__Cellulomonas soli", "ani": 81.1988, "matched_fragments": 783, "total_fragments": 1611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.176, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 25.0, "optimum_ph": 7.2, "genome_size": 1171080.0, "gc_content": 73.924, "coding_genes": 3692.833, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulomonas", "chitinilytica" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }