{ "type": "genome", "identifier": "GCF_016862695.1", "organism": "Cellulomonas denverensis", "title": "Cellulomonas denverensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862695.1", "bioproject": "PRJNA224116", "biosample": "SAMD00230179", "wgs_master": "BONL00000000.1", "refseq_category": "reference genome", "taxid": "264297", "species_taxid": "264297", "organism_name": "Cellulomonas denverensis", "infraspecific_name": "strain=NBRC 110783", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686269v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/695/GCF_016862695.1_ASM1686269v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3997997", "genome_size_ungapped": "3997997", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862695.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3690", "protein_coding_gene_count": "3612", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas denverensis" ], "sample_taxid": [ "264297" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Colorado, Denver" ], "sample_host_location_id": [], "data_size": "1.050 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3997997", "Number of Sequences": "54", "Longest Sequences (bp)": "363093", "N50 (bp)": "144148", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.9", "Number of CDSs": "3644", "Average Protein Length": "332.3", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas denverensis", "strain": "strain=ATCC BAA-788", "accession": "GCA_012396125.1", "taxid": 264297, "species_taxid": 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1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 79.3554, "matched_fragments": 474, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas oligotrophica", "strain": "strain=DSM 24482", "accession": "GCA_013409875.1", "taxid": 931536, "species_taxid": 931536, "relation_to_type": "type", "validated": true, "ani": 79.0499, "matched_fragments": 569, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 78.9745, "matched_fragments": 568, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas telluris", "strain": "strain=CPCC 204705", "accession": "GCA_004886325.1", "taxid": 2306636, "species_taxid": 2306636, "relation_to_type": "type", "validated": true, "ani": 78.8529, "matched_fragments": 562, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 78.8101, "matched_fragments": 520, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 78.4881, "matched_fragments": 415, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas endophytica", 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"num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.019, "cell_length": 0.334, "doubling_h": null, "growth_tmp": 32.0, "optimum_tmp": 28.666, "optimum_ph": 7.856, "genome_size": 1438440.0, "gc_content": 73.924, "coding_genes": 3692.833, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.846, "coccus_cell_shape": 0.076, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.076, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulomonas", "denverensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }