{ "type": "genome", "identifier": "GCF_016862775.1", "organism": "Cellulomonas phragmiteti", "title": "Cellulomonas phragmiteti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862775.1", "bioproject": "PRJNA224116", "biosample": "SAMD00231354", "wgs_master": "BONP00000000.1", "refseq_category": "reference genome", "taxid": "478780", "species_taxid": "478780", "organism_name": "Cellulomonas phragmiteti", "infraspecific_name": "strain=NBRC 110785", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686277v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/775/GCF_016862775.1_ASM1686277v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4151854", "genome_size_ungapped": "4151854", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862775.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3803", "protein_coding_gene_count": "3721", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas phragmiteti" ], "sample_taxid": [ "478780" ], "sample_host_organism": [ "Phragmites australis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary:Budapest, Kiskuns?g National Park" ], "sample_host_location_id": [], "data_size": "1.079 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4151854", "Number of Sequences": "67", "Longest Sequences (bp)": "409983", "N50 (bp)": "172621", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.7", "Number of CDSs": "3721", "Average Protein Length": "337.4", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": 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