{ "type": "genome", "identifier": "GCF_016862975.1", "organism": "Rugosimonospora africana", "title": "Rugosimonospora africana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862975.1", "bioproject": "PRJNA224116", "biosample": "SAMD00231958", "wgs_master": "BONZ00000000.1", "refseq_category": "reference genome", "taxid": "556532", "species_taxid": "556532", "organism_name": "Rugosimonospora africana", "infraspecific_name": "strain=NBRC 104875", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686297v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/975/GCF_016862975.1_ASM1686297v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11125243", "genome_size_ungapped": "11125243", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "219", "contig_count": "219", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862975.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "9924", "protein_coding_gene_count": "9652", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Rugosimonospora africana" ], "sample_taxid": [ "556532" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Cameroon" ], "sample_host_location_id": [], "data_size": "3.012 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11125243", "Number of Sequences": "219", "Longest Sequences (bp)": "498464", "N50 (bp)": "126687", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "9862", "Average Protein Length": "329.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "2", "Number of tRNAs": "100", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rugosimonospora africana", "strain": "strain=NBRC 104875", "accession": "GCA_016862975.1", "taxid": 556532, "species_taxid": 556532, 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