{ "type": "genome", "identifier": "GCF_016862995.1", "organism": "Acrocarpospora phusangensis", "title": "Acrocarpospora phusangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862995.1", "bioproject": "PRJNA224116", "biosample": "SAMD00231959", "wgs_master": "BOOA00000000.1", "refseq_category": "reference genome", "taxid": "1070424", "species_taxid": "1070424", "organism_name": "Acrocarpospora phusangensis", "infraspecific_name": "strain=NBRC 108782", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686299v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/995/GCF_016862995.1_ASM1686299v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9111823", "genome_size_ungapped": "9111823", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "220", "contig_count": "220", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862995.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "8256", "protein_coding_gene_count": "8095", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Acrocarpospora phusangensis" ], "sample_taxid": [ "1070424" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Phayao" ], "sample_host_location_id": [], "data_size": "2.477 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9111823", "Number of Sequences": "220", "Longest Sequences (bp)": "277017", "N50 (bp)": "96572", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.1", "Number of CDSs": "8145", "Average Protein Length": "330.3", "Coding Ratio (%)": "88.6", "Number of rRNAs": "1", "Number of tRNAs": "74", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acrocarpospora phusangensis", "strain": "strain=NBRC 108782", "accession": "GCA_016862995.1", "taxid": 1070424, "species_taxid": 1070424, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2924, "total_fragments": 2934, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acrocarpospora macrocephala", "strain": "strain=NBRC 16266", "accession": "GCA_009687865.1", "taxid": 150177, "species_taxid": 150177, "relation_to_type": "type", "validated": true, "ani": 87.6437, "matched_fragments": 2097, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora pleiomorpha", "strain": "strain=NBRC 16267", "accession": "GCA_009687885.1", "taxid": 90975, "species_taxid": 90975, "relation_to_type": "type", "validated": true, "ani": 87.6028, "matched_fragments": 2049, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora corrugata", "strain": "strain=NBRC 13972", "accession": "GCA_009687845.1", "taxid": 35763, "species_taxid": 35763, "relation_to_type": "type", "validated": true, "ani": 87.6008, "matched_fragments": 2052, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora catenulata", "strain": "strain=H8750", "accession": "GCA_018476525.1", "taxid": 2836182, "species_taxid": 2836182, "relation_to_type": "type", "validated": true, "ani": 84.4176, "matched_fragments": 1772, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora rosea subsp. aerata", "strain": "strain=NBRC 14624", "accession": "GCA_016863075.1", "taxid": 147065, "species_taxid": 58117, "relation_to_type": "type", "validated": true, "ani": 80.0594, "matched_fragments": 1104, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora oryzae", "strain": "strain=RL4-1S", "accession": "GCA_017896165.1", "taxid": 2806554, "species_taxid": 2806554, "relation_to_type": "type", "validated": true, "ani": 79.951, "matched_fragments": 1098, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 79.7646, "matched_fragments": 853, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium corydalis", "strain": "strain=NEAU-YHS15", "accession": "GCA_025506355.1", "taxid": 1441875, "species_taxid": 1441875, "relation_to_type": "type", "validated": true, "ani": 79.7581, "matched_fragments": 1261, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea mesophila", "strain": "strain=6K102", "accession": "GCA_004352805.1", "taxid": 2530382, "species_taxid": 2530382, "relation_to_type": "type", "validated": true, "ani": 79.0365, "matched_fragments": 1150, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 79.0359, "matched_fragments": 1267, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea longispora", "strain": "strain=KC201", "accession": "GCA_004348345.1", "taxid": 1848320, "species_taxid": 1848320, "relation_to_type": "type", "validated": true, "ani": 78.9005, "matched_fragments": 1114, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola scoriae", "strain": "strain=DSM 22127", "accession": "GCA_900104965.1", "taxid": 642780, "species_taxid": 642780, "relation_to_type": "type", "validated": true, "ani": 76.5832, "matched_fragments": 429, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aequoreus", "strain": "strain=NRRL B-24464", "accession": "GCA_000720335.1", "taxid": 397278, "species_taxid": 397278, "relation_to_type": "type", "validated": true, "ani": 76.5164, "matched_fragments": 418, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas humilata", "strain": "strain=ATCC 25174", "accession": "GCA_013359775.1", "taxid": 144055, "species_taxid": 144055, "relation_to_type": "type", "validated": true, "ani": 75.9402, "matched_fragments": 401, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium radiodurans", "strain": "strain=DSM 25564", "accession": "GCA_008710705.1", "taxid": 661398, "species_taxid": 661398, "relation_to_type": "type", "validated": true, "ani": 75.3162, "matched_fragments": 212, "total_fragments": 2934, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016862995.1", "gtdb_species": "s__Acrocarpospora phusangensis", "ani": 100.0, "matched_fragments": 2924, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009687865.1", "gtdb_species": "s__Acrocarpospora macrocephala", "ani": 87.6406, "matched_fragments": 2097, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009687845.1", "gtdb_species": "s__Acrocarpospora corrugata", "ani": 87.6295, "matched_fragments": 2048, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009687885.1", "gtdb_species": "s__Acrocarpospora pleiomorpha", "ani": 87.624, "matched_fragments": 2045, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018476525.1", "gtdb_species": "s__Acrocarpospora sp018476525", "ani": 84.4022, "matched_fragments": 1774, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014647835.1", "gtdb_species": "s__Microbispora aerata", "ani": 80.1415, "matched_fragments": 1092, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001552515.1", "gtdb_species": "s__Sphaerimonospora mesophila", "ani": 79.7032, "matched_fragments": 976, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Sphaerimonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004348345.1", "gtdb_species": "s__Nonomuraea longispora", "ani": 78.9143, "matched_fragments": 1110, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nonomuraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.23", "min_intra_species_ani": "95.05", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000701325.1", "gtdb_species": "s__Streptomyces sp000701325", "ani": 76.5759, "matched_fragments": 634, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000720335.1", "gtdb_species": "s__Marmoricola aequoreus", "ani": 76.5253, "matched_fragments": 415, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Marmoricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007988785.1", "gtdb_species": "s__Agrococcus baldri_A", "ani": 75.5435, "matched_fragments": 260, "total_fragments": 2934, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agrococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 27.5, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Acrocarpospora", "phusangensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }