{
    "type": "genome",
    "identifier": "GCF_016863035.1",
    "organism": "Microbispora corallina",
    "title": "Microbispora corallina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016863035.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00231961",
        "wgs_master": "BOOC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "83302",
        "species_taxid": "83302",
        "organism_name": "Microbispora corallina",
        "infraspecific_name": "strain=NBRC 16416",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/29",
        "asm_name": "ASM1686303v1",
        "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)",
        "gbrs_paired_asm": "GCA_016863035.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/035/GCF_016863035.1_ASM1686303v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8361641",
        "genome_size_ungapped": "8361641",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "122",
        "contig_count": "122",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016863035.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "7837",
        "protein_coding_gene_count": "7668",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-29",
    "dateModified": "2021-01-29",
    "datePublished": "2021-01-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbispora corallina"
        ],
        "sample_taxid": [
            "83302"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand:Bangkok, Chatuchak"
        ],
        "sample_host_location_id": [],
        "data_size": "2.238 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 1.85,
        "strain_heterogeneity": 40.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8361641",
        "Number of Sequences": "122",
        "Longest Sequences (bp)": "749639",
        "N50 (bp)": "183584",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.4",
        "Number of CDSs": "7821",
        "Average Protein Length": "317.0",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbispora corallina",
                "strain": "strain=NBRC 16416",
                "accession": "GCA_016863035.1",
                "taxid": 83302,
                "species_taxid": 83302,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2728,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microbispora oryzae",
                "strain": "strain=RL4-1S",
                "accession": "GCA_017896165.1",
                "taxid": 2806554,
                "species_taxid": 2806554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1561,
                "matched_fragments": 1627,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora rosea subsp. rosea",
                "strain": "strain=NBRC 14044",
                "accession": "GCA_016863055.1",
                "taxid": 58118,
                "species_taxid": 58117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0993,
                "matched_fragments": 1776,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora rosea",
                "strain": "strain=ATCC 12950",
                "accession": "GCA_900156315.1",
                "taxid": 58117,
                "species_taxid": 58117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.052,
                "matched_fragments": 1813,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora siamensis",
                "strain": "strain=NBRC 104113",
                "accession": "GCA_016863095.1",
                "taxid": 564413,
                "species_taxid": 564413,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0009,
                "matched_fragments": 1820,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora sitophila",
                "strain": "strain=NEAU-D428",
                "accession": "GCA_014892245.1",
                "taxid": 2771537,
                "species_taxid": 2771537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9903,
                "matched_fragments": 1823,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora hainanensis",
                "strain": "strain=DSM 45428",
                "accession": "GCA_006874475.1",
                "taxid": 568844,
                "species_taxid": 568844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9825,
                "matched_fragments": 1769,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora rosea subsp. aerata",
                "strain": "strain=NBRC 14624",
                "accession": "GCA_016863075.1",
                "taxid": 147065,
                "species_taxid": 58117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6037,
                "matched_fragments": 1472,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora cellulosiformans",
                "strain": "strain=Gxj-6",
                "accession": "GCA_008728085.1",
                "taxid": 2614688,
                "species_taxid": 2614688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5323,
                "matched_fragments": 1612,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora fusca",
                "strain": "strain=NEAU-HEGS1-5",
                "accession": "GCA_005864065.1",
                "taxid": 2576905,
                "species_taxid": 2576905,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4837,
                "matched_fragments": 1623,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerimonospora thailandensis",
                "strain": "strain=NBRC 107569",
                "accession": "GCA_016863115.1",
                "taxid": 795644,
                "species_taxid": 795644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2827,
                "matched_fragments": 1125,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea roseoviolacea subsp. carminata",
                "strain": "strain=DSM 44170",
                "accession": "GCA_024172185.1",
                "taxid": 160689,
                "species_taxid": 103837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.708,
                "matched_fragments": 1376,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea rhizosphaerae",
                "strain": "strain=CGMCC 4.7431",
                "accession": "GCA_019396405.1",
                "taxid": 2665663,
                "species_taxid": 2665663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6851,
                "matched_fragments": 880,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea aurantiaca",
                "strain": "strain=NEAU-L178",
                "accession": "GCA_020215705.1",
                "taxid": 2878562,
                "species_taxid": 2878562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3511,
                "matched_fragments": 1293,
                "total_fragments": 2732,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 1.85,
            "strain_heterogeneity": 40.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016863035.1",
                "gtdb_species": "s__Microbispora corallina",
                "ani": 100.0,
                "matched_fragments": 2728,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "97.01",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017896165.1",
                "gtdb_species": "s__Microbispora sp017896165",
                "ani": 84.1328,
                "matched_fragments": 1631,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006334915.2",
                "gtdb_species": "s__Microbispora catharanthi",
                "ani": 84.1263,
                "matched_fragments": 1828,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900156315.1",
                "gtdb_species": "s__Microbispora rosea",
                "ani": 84.0559,
                "matched_fragments": 1814,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_006874475.1",
                "gtdb_species": "s__Microbispora hainanensis",
                "ani": 84.011,
                "matched_fragments": 1765,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.41",
                "min_intra_species_ani": "95.40",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_016863095.1",
                "gtdb_species": "s__Microbispora siamensis",
                "ani": 83.9952,
                "matched_fragments": 1822,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.99",
                "min_intra_species_ani": "95.83",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_006874465.1",
                "gtdb_species": "s__Microbispora bryophytorum",
                "ani": 83.8759,
                "matched_fragments": 1696,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "97.66",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014161445.1",
                "gtdb_species": "s__Microbispora sp014161445",
                "ani": 83.8425,
                "matched_fragments": 1744,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.71",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012999535.1",
                "gtdb_species": "s__Microbispora sp012999535",
                "ani": 83.6933,
                "matched_fragments": 1596,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003260025.2",
                "gtdb_species": "s__Microbispora triticiradicis",
                "ani": 83.5907,
                "matched_fragments": 1557,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_014647835.1",
                "gtdb_species": "s__Microbispora aerata",
                "ani": 83.5848,
                "matched_fragments": 1471,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016863015.1",
                "gtdb_species": "s__Microbispora amethystogenes",
                "ani": 83.4931,
                "matched_fragments": 1605,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Microbispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016863115.1",
                "gtdb_species": "s__Sphaerimonospora thailandensis",
                "ani": 82.3242,
                "matched_fragments": 1118,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Sphaerimonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001552515.1",
                "gtdb_species": "s__Sphaerimonospora mesophila",
                "ani": 82.2102,
                "matched_fragments": 1236,
                "total_fragments": 2732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Sphaerimonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 8684309.667,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Microbispora",
        "corallina"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}