{ "type": "genome", "identifier": "GCF_016863135.1", "organism": "Planobispora longispora", "title": "Planobispora longispora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016863135.1", "bioproject": "PRJNA224116", "biosample": "SAMD00231966", "wgs_master": "BOOH00000000.1", "refseq_category": "reference genome", "taxid": "28887", "species_taxid": "28887", "organism_name": "Planobispora longispora", "infraspecific_name": "strain=NBRC 13918", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686313v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016863135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/135/GCF_016863135.1_ASM1686313v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8845392", "genome_size_ungapped": "8845392", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "121", "contig_count": "121", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016863135.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "8026", "protein_coding_gene_count": "7872", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Planobispora longispora" ], "sample_taxid": [ "28887" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Venezuela" ], "sample_host_location_id": [], "data_size": "2.370 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8845392", "Number of Sequences": "121", "Longest Sequences (bp)": "552018", "N50 (bp)": "165183", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "8021", "Average Protein Length": "323.8", "Coding Ratio (%)": "88.1", "Number of rRNAs": "1", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planobispora longispora", "strain": "strain=NBRC 13918", "accession": "GCA_016863135.1", "taxid": 28887, "species_taxid": 28887, 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"total_fragments": 2893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium minutum", "strain": "strain=M26", "accession": "GCA_002149035.1", "taxid": 569862, "species_taxid": 569862, "relation_to_type": "type", "validated": true, "ani": 84.3457, "matched_fragments": 1650, "total_fragments": 2893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 80.5432, "matched_fragments": 1007, "total_fragments": 2893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 80.3055, "matched_fragments": 1504, "total_fragments": 2893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 80.1197, "matched_fragments": 1485, "total_fragments": 2893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 80.0909, "matched_fragments": 1479, "total_fragments": 2893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 80.0656, "matched_fragments": 1466, "total_fragments": 2893, "ani_threshold": 95, "status": "below_threshold" } ], 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"mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.0, "cell_length": 0.414, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 27.5, "optimum_ph": null, "genome_size": 8690710.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Planobispora", "longispora" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }