{
    "type": "genome",
    "identifier": "GCF_016863295.1",
    "organism": "Planotetraspora phitsanulokensis",
    "title": "Planotetraspora phitsanulokensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016863295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00232353",
        "wgs_master": "BOOP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "575192",
        "species_taxid": "575192",
        "organism_name": "Planotetraspora phitsanulokensis",
        "infraspecific_name": "strain=NBRC 104273",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/29",
        "asm_name": "ASM1686329v1",
        "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)",
        "gbrs_paired_asm": "GCA_016863295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/295/GCF_016863295.1_ASM1686329v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9167700",
        "genome_size_ungapped": "9167700",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "96",
        "contig_count": "96",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016863295.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "8560",
        "protein_coding_gene_count": "8408",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-29",
    "dateModified": "2021-01-29",
    "datePublished": "2021-01-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Planotetraspora phitsanulokensis"
        ],
        "sample_taxid": [
            "575192"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "2.496 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.85,
        "strain_heterogeneity": 75.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9167700",
        "Number of Sequences": "96",
        "Longest Sequences (bp)": "593846",
        "N50 (bp)": "241605",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.6",
        "Number of CDSs": "8579",
        "Average Protein Length": "313.3",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Planotetraspora phitsanulokensis",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Planotetraspora kaengkrachanensis",
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                "accession": "GCA_016862895.1",
                "taxid": 575193,
                "species_taxid": 575193,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2468,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planotetraspora mira",
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                "species_taxid": 58121,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Planotetraspora silvatica",
                "strain": "strain=NBRC 100141",
                "accession": "GCA_016863315.1",
                "taxid": 234614,
                "species_taxid": 234614,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6359,
                "matched_fragments": 2333,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planotetraspora thailandica",
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                "accession": "GCA_016863335.1",
                "taxid": 487172,
                "species_taxid": 487172,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8417,
                "matched_fragments": 2098,
                "total_fragments": 3013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbispora oryzae",
                "strain": "strain=RL4-1S",
                "accession": "GCA_017896165.1",
                "taxid": 2806554,
                "species_taxid": 2806554,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1295,
                "total_fragments": 3013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerimonospora thailandensis",
                "strain": "strain=NBRC 107569",
                "accession": "GCA_016863115.1",
                "taxid": 795644,
                "species_taxid": 795644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4008,
                "matched_fragments": 1029,
                "total_fragments": 3013,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerisporangium corydalis",
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                "accession": "GCA_025506355.1",
                "taxid": 1441875,
                "species_taxid": 1441875,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea rhizosphaerae",
                "strain": "strain=CGMCC 4.7431",
                "accession": "GCA_019396405.1",
                "taxid": 2665663,
                "species_taxid": 2665663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.364,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea aurantiaca",
                "strain": "strain=NEAU-L178",
                "accession": "GCA_020215705.1",
                "taxid": 2878562,
                "species_taxid": 2878562,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 75.0
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                "accession": "GCF_016863295.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Planotetraspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_016862895.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
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                "status": "-"
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.398,
        "cell_length": -0.097,
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        "growth_tmp": 28.0,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Planotetraspora",
        "phitsanulokensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}