{ "type": "genome", "identifier": "GCF_016863375.1", "organism": "Sphaerisporangium melleum", "title": "Sphaerisporangium melleum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016863375.1", "bioproject": "PRJNA224116", "biosample": "SAMD00233767", "wgs_master": "BOOT00000000.1", "refseq_category": "reference genome", "taxid": "321316", "species_taxid": "321316", "organism_name": "Sphaerisporangium melleum", "infraspecific_name": "strain=NBRC 107356", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686337v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016863375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/375/GCF_016863375.1_ASM1686337v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8642818", "genome_size_ungapped": "8642818", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "136", "contig_count": "136", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016863375.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "7485", "protein_coding_gene_count": "7341", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphaerisporangium melleum" ], "sample_taxid": [ "321316" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Bangladesh" ], "sample_host_location_id": [], "data_size": "2.326 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8642818", "Number of Sequences": "136", "Longest Sequences (bp)": "626313", "N50 (bp)": "171123", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "7494", "Average Protein Length": "329.0", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "72", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphaerisporangium melleum", "strain": "strain=JCM 13064", "accession": "GCA_014646695.1", "taxid": 321316, "species_taxid": 321316, 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"matched_fragments": 1497, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rufum", "strain": "strain=NBRC 109079", "accession": "GCA_016863395.1", "taxid": 1381558, "species_taxid": 1381558, "relation_to_type": "type", "validated": true, "ani": 82.523, "matched_fragments": 1553, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rubeum", "strain": "strain=DSM 44936", "accession": "GCA_014207705.1", "taxid": 321317, "species_taxid": 321317, "relation_to_type": "type", "validated": true, "ani": 82.1713, "matched_fragments": 1422, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora oryzae", "strain": "strain=RL4-1S", "accession": "GCA_017896165.1", "taxid": 2806554, "species_taxid": 2806554, "relation_to_type": "type", "validated": true, "ani": 80.1973, "matched_fragments": 1204, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 80.167, "matched_fragments": 1286, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 80.1377, "matched_fragments": 1284, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.8543, "matched_fragments": 1335, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 79.852, "matched_fragments": 848, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium album", "strain": "strain=DSM 43023", "accession": "GCA_014203795.1", "taxid": 47479, "species_taxid": 47479, "relation_to_type": "type", "validated": true, "ani": 79.6649, "matched_fragments": 1183, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 79.1058, "matched_fragments": 1248, "total_fragments": 2819, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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