{ "type": "genome", "identifier": "GCF_016863435.1", "organism": "Sinosporangium siamense", "title": "Sinosporangium siamense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016863435.1", "bioproject": "PRJNA224116", "biosample": "SAMD00233770", "wgs_master": "BOOW00000000.1", "refseq_category": "reference genome", "taxid": "1367973", "species_taxid": "1367973", "organism_name": "Sinosporangium siamense", "infraspecific_name": "strain=NBRC 109515", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686343v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016863435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/435/GCF_016863435.1_ASM1686343v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8856722", "genome_size_ungapped": "8856722", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016863435.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "7715", "protein_coding_gene_count": "7541", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Sinosporangium siamense" ], "sample_taxid": [ "1367973" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Ubon Ratchathani" ], "sample_host_location_id": [], "data_size": "2.429 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.61, "contamination": 15.74, "strain_heterogeneity": 16.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8856722", "Number of Sequences": "85", "Longest Sequences (bp)": "650024", "N50 (bp)": "177930", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "7853", "Average Protein Length": "320.6", "Coding Ratio (%)": "85.3", "Number of rRNAs": "2", "Number of tRNAs": "79", "Number of CRISPRs": "25" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea lactucae", "strain": "strain=NEAU-YG30", "accession": "GCA_003313395.1", "taxid": 2249762, "species_taxid": 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"Nonomuraea africana", "strain": "strain=DSM 43748", "accession": "GCA_014873535.1", "taxid": 46171, "species_taxid": 46171, "relation_to_type": "type", "validated": true, "ani": 79.1549, "matched_fragments": 1071, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.145, "matched_fragments": 1108, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium melleum", "strain": "strain=JCM 13064", "accession": "GCA_014646695.1", "taxid": 321316, "species_taxid": 321316, "relation_to_type": "type", "validated": true, "ani": 79.0335, "matched_fragments": 921, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 79.0191, "matched_fragments": 1064, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 78.8959, "matched_fragments": 1093, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microtetraspora malaysiensis", "strain": "strain=NBRC 100735", "accession": "GCA_001528665.1", "taxid": 161358, "species_taxid": 161358, "relation_to_type": "type", "validated": true, "ani": 78.8925, "matched_fragments": 947, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", 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