{ "type": "genome", "identifier": "GCF_016863475.1", "organism": "Spirilliplanes yamanashiensis", "title": "Spirilliplanes yamanashiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016863475.1", "bioproject": "PRJNA224116", "biosample": "SAMD00233772", "wgs_master": "BOOY00000000.1", "refseq_category": "na", "taxid": "42233", "species_taxid": "42233", "organism_name": "Spirilliplanes yamanashiensis", "infraspecific_name": "strain=NBRC 15828", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686347v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016863475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/475/GCF_016863475.1_ASM1686347v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6500159", "genome_size_ungapped": "6500159", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016863475.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6175", "protein_coding_gene_count": "6032", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirilliplanes yamanashiensis" ], "sample_taxid": [ "42233" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Yamanashi, Kofu" ], "sample_host_location_id": [], "data_size": "1.695 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6500159", "Number of Sequences": "60", "Longest Sequences (bp)": "353164", "N50 (bp)": "208554", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.5", "Number of CDSs": "6138", "Average Protein Length": "324.3", "Coding Ratio (%)": "91.9", "Number of rRNAs": "3", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes nipponensis", "strain": "strain=NBRC 14063", "accession": "GCA_016862275.1", "taxid": 135950, "species_taxid": 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2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 79.8263, "matched_fragments": 1125, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 79.8252, "matched_fragments": 1118, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes brasiliensis", "strain": "strain=NBRC 13938", "accession": "GCA_016862015.1", "taxid": 52695, "species_taxid": 52695, "relation_to_type": "type", "validated": true, "ani": 79.772, "matched_fragments": 1177, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes atraurantiacus", "strain": "strain=CGMCC 4.6857", "accession": "GCA_900215205.1", "taxid": 1036182, "species_taxid": 1036182, "relation_to_type": "type", "validated": true, "ani": 79.7653, "matched_fragments": 1275, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes rishiriensis", "strain": "strain=NBRC 108556", "accession": "GCA_016862375.1", "taxid": 1050105, "species_taxid": 1050105, "relation_to_type": "type", "validated": true, "ani": 79.7645, "matched_fragments": 1267, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes subtropicus", "strain": "strain=NRRL B-24665", "accession": "GCA_000721705.1", "taxid": 543632, "species_taxid": 543632, "relation_to_type": "type", "validated": true, "ani": 79.7529, "matched_fragments": 1228, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lichenicola", "strain": "strain=LDG1-01", "accession": "GCA_016785085.1", "taxid": 2802976, "species_taxid": 2802976, "relation_to_type": "type", "validated": true, "ani": 79.7437, "matched_fragments": 1270, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 79.7091, "matched_fragments": 1105, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora orduensis", "strain": "strain=S2509", "accession": "GCA_006228125.1", "taxid": 1420891, "species_taxid": 1420891, "relation_to_type": "type", "validated": true, "ani": 79.6511, "matched_fragments": 977, "total_fragments": 2140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", 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