{ "type": "genome", "identifier": "GCF_016863495.1", "organism": "Micromonospora andamanensis", "title": "Micromonospora andamanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016863495.1", "bioproject": "PRJNA224116", "biosample": "SAMD00233773", "wgs_master": "BOOZ00000000.1", "refseq_category": "reference genome", "taxid": "1287068", "species_taxid": "1287068", "organism_name": "Micromonospora andamanensis", "infraspecific_name": "strain=NBRC 109075", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686349v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016863495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/495/GCF_016863495.1_ASM1686349v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7078060", "genome_size_ungapped": "7078060", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "130", "contig_count": "130", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016863495.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6611", "protein_coding_gene_count": "6434", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora andamanensis" ], "sample_taxid": [ "1287068" ], "sample_host_organism": [ "Xestospongia sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Phuket" ], "sample_host_location_id": [], "data_size": "1.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7078060", "Number of Sequences": "130", "Longest Sequences (bp)": "497308", "N50 (bp)": "135514", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "6530", "Average Protein Length": "320.6", "Coding Ratio (%)": "88.7", "Number of rRNAs": "2", "Number of tRNAs": "71", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora phaseoli", "strain": "strain=CGMCC 4.7038", "accession": 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"type", "validated": true, "ani": 85.9465, "matched_fragments": 1357, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fiedleri", "strain": "strain=MG-37", "accession": "GCA_016774385.1", "taxid": 1157498, "species_taxid": 1157498, "relation_to_type": "type", "validated": true, "ani": 85.928, "matched_fragments": 1519, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_014764405.1", "taxid": 2294034, "species_taxid": 2294034, "relation_to_type": "type", "validated": true, "ani": 85.9028, "matched_fragments": 1376, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora gifhornensis", "strain": "strain=NBRC 16317", "accession": "GCA_016863515.1", "taxid": 84594, "species_taxid": 84594, "relation_to_type": "type", "validated": true, "ani": 85.7967, "matched_fragments": 1471, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 85.7818, "matched_fragments": 1518, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=AB-18-032", "accession": "GCA_000204155.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 85.7571, "matched_fragments": 1520, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora nigra", "strain": "strain=DSM 43818", "accession": "GCA_900091585.1", "taxid": 145857, "species_taxid": 145857, "relation_to_type": "type", "validated": true, "ani": 84.1734, "matched_fragments": 1281, "total_fragments": 2297, 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