{ "type": "genome", "identifier": "GCF_016863555.1", "organism": "Micromonospora qiuiae", "title": "Micromonospora qiuiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016863555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00236176", "wgs_master": "BOPC00000000.1", "refseq_category": "reference genome", "taxid": "502268", "species_taxid": "502268", "organism_name": "Micromonospora qiuiae", "infraspecific_name": "strain=NBRC 106684", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686355v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016863555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/863/555/GCF_016863555.1_ASM1686355v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6763409", "genome_size_ungapped": "6763409", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "211", "contig_count": "211", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016863555.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6151", "protein_coding_gene_count": "5929", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora qiuiae" ], "sample_taxid": [ "502268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:South China, Hainan" ], "sample_host_location_id": [], "data_size": "1.833 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6763409", "Number of Sequences": "211", "Longest Sequences (bp)": "210907", "N50 (bp)": "69856", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "6014", "Average Protein Length": "324.0", "Coding Ratio (%)": "86.4", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora craterilacus", "strain": "strain=NA12", "accession": "GCA_003236315.1", "taxid": 1655439, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora gifhornensis", "strain": "strain=NBRC 16317", "accession": "GCA_016863515.1", "taxid": 84594, "species_taxid": 84594, "relation_to_type": "type", "validated": true, "ani": 86.4192, "matched_fragments": 1376, "total_fragments": 2154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_003419945.1", "taxid": 2294034, "species_taxid": 2294034, "relation_to_type": "type", "validated": true, "ani": 86.1203, "matched_fragments": 1269, "total_fragments": 2154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_014764405.1", "taxid": 2294034, "species_taxid": 2294034, "relation_to_type": "type", "validated": true, "ani": 86.1131, "matched_fragments": 1292, "total_fragments": 2154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.0301, "matched_fragments": 973, "total_fragments": 2154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora endolithica", "strain": "strain=JCM 12677", "accession": "GCA_003626595.1", "taxid": 230091, "species_taxid": 230091, "relation_to_type": "type", "validated": true, "ani": 83.6359, "matched_fragments": 1218, "total_fragments": 2154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora endolithica", "strain": "strain=DSM 44398", "accession": "GCA_007994185.1", "taxid": 230091, "species_taxid": 230091, "relation_to_type": "type", "validated": true, "ani": 83.6084, "matched_fragments": 1247, "total_fragments": 2154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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