{ "tc_result": [ { "organism_name": "Ensifer sesbaniae", "strain": "strain=CCBAU 65729", "accession": "GCA_013283665.1", "taxid": 1214071, "species_taxid": 1214071, "relation_to_type": "type", "validated": true, "ani": 83.7328, "matched_fragments": 1437, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=NBRC 14780", "accession": "GCA_006539605.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.6004, "matched_fragments": 1053, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.564, "matched_fragments": 1090, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA205", "accession": "GCA_009601405.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.5018, "matched_fragments": 1104, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=USDA1002", "accession": "GCA_009601385.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 81.3725, "matched_fragments": 1114, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=NBRC 14782", "accession": "GCA_006539625.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 81.3518, "matched_fragments": 1069, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer mexicanus", "strain": "strain=DSM 18446", "accession": "GCA_017873105.1", "taxid": 375549, "species_taxid": 375549, "relation_to_type": "type", "validated": true, "ani": 81.3426, "matched_fragments": 1139, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer mexicanus", "strain": "strain=ITTG R7", "accession": "GCA_013488225.1", "taxid": 375549, "species_taxid": 375549, "relation_to_type": "type", "validated": true, "ani": 81.3271, "matched_fragments": 1140, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer psoraleae", "strain": "strain=CCBAU 65732", "accession": "GCA_013283645.1", "taxid": 520838, "species_taxid": 520838, "relation_to_type": "type", "validated": true, "ani": 81.1332, "matched_fragments": 1192, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 80.779, "matched_fragments": 849, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=DSM 287", "accession": "GCA_009826855.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 80.7465, "matched_fragments": 850, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_000261485.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 80.7159, "matched_fragments": 920, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_002288525.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 80.7052, "matched_fragments": 944, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 80.5462, "matched_fragments": 838, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium kostiense", "strain": "strain=DSM 13372", "accession": "GCA_017874595.1", "taxid": 76747, "species_taxid": 76747, "relation_to_type": "type", "validated": true, "ani": 80.5292, "matched_fragments": 936, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 80.4118, "matched_fragments": 811, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella oryzae", "strain": "strain=Z-25", "accession": "GCA_023038235.1", "taxid": 2871820, "species_taxid": 2871820, "relation_to_type": "type", "validated": true, "ani": 80.3755, "matched_fragments": 832, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhizobium antarcticum", "strain": "strain=NAQVI 59", "accession": "GCA_001885585.1", "taxid": 1798805, "species_taxid": 1798805, "relation_to_type": "type", "validated": true, "ani": 79.922, "matched_fragments": 827, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pisi", "strain": "strain=DSM 30132", "accession": "GCA_003938655.1", "taxid": 574561, "species_taxid": 574561, "relation_to_type": "type", "validated": true, "ani": 79.488, "matched_fragments": 803, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium fabae", "strain": "strain=DSM 19331", "accession": "GCA_014196235.1", "taxid": 573179, "species_taxid": 573179, "relation_to_type": "type", "validated": true, "ani": 79.4154, "matched_fragments": 791, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium fabae", "strain": "strain=CCBAU 33202", "accession": "GCA_003985135.1", "taxid": 573179, "species_taxid": 573179, "relation_to_type": "type", "validated": true, "ani": 79.3796, "matched_fragments": 783, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 79.026, "matched_fragments": 594, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=Ch11", "accession": "GCA_023757665.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 77.7812, "matched_fragments": 390, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=DSM 26438", "accession": "GCA_014196515.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 77.6955, "matched_fragments": 392, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000583045.1", "gtdb_species": "s__Ensifer adhaerens_A", "ani": 98.6673, "matched_fragments": 2171, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCF_001695855.1", "gtdb_species": "s__Ensifer sp001695855", "ani": 90.3399, "matched_fragments": 1768, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001270265.1", "gtdb_species": "s__Ensifer adhaerens_B", "ani": 90.2393, "matched_fragments": 1874, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002002725.1", "gtdb_species": "s__Ensifer sp002002725", "ani": 89.1098, "matched_fragments": 1801, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013371465.1", "gtdb_species": "s__Ensifer sp013371465", "ani": 88.8091, "matched_fragments": 1762, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013283195.1", "gtdb_species": "s__Ensifer adhaerens_G", "ani": 88.6767, "matched_fragments": 1782, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900469625.1", "gtdb_species": "s__Ensifer sp900469625", "ani": 87.5252, "matched_fragments": 1673, "total_fragments": 2595, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" } ] }