{ "type": "genome", "identifier": "GCF_016881005.1", "organism": "Pseudomonas arcuscaelestis", "title": "Pseudomonas arcuscaelestis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Erciyes University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016881005.1", "bioproject": "PRJNA224116", "biosample": "SAMN15848022", "wgs_master": "JACOPV000000000.1", "refseq_category": "reference genome", "taxid": "2710591", "species_taxid": "2710591", "organism_name": "Pseudomonas arcuscaelestis", "infraspecific_name": "strain=P66", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/12", "asm_name": "ASM1688100v1", "asm_submitter": "Erciyes University", "gbrs_paired_asm": "GCA_016881005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/881/005/GCF_016881005.1_ASM1688100v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6283771", "genome_size_ungapped": "6283574", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "88", "contig_count": "88", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-30", "total_gene_count": "5916", "protein_coding_gene_count": "5730", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-12", "dateModified": "2021-02-12", "datePublished": "2021-02-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas arcuscaelestis" ], "sample_taxid": [ "2710591" ], "sample_host_organism": [ "Oncorhynchus mykiss" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey:Mugla" ], "sample_host_location_id": [], "data_size": "1.777 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6283771", "Number of Sequences": "88", "Longest Sequences (bp)": "496467", "N50 (bp)": "285208", "Gap Ratio (%)": "0.003135", "GCcontent (%)": "58.5", "Number of CDSs": "5824", "Average Protein Length": "318.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "5", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas arcuscaelestis", "strain": "strain=P66", "accession": "GCA_016881005.1", "taxid": 2710591, "species_taxid": 2710591, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2054, 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"below_threshold" }, { "organism_name": "Pseudomonas defluvii", "strain": "strain=WCHP16", "accession": "GCA_001695625.1", "taxid": 1876757, "species_taxid": 1876757, "relation_to_type": "type", "validated": true, "ani": 82.53, "matched_fragments": 906, "total_fragments": 2056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=NBRC 103040", "accession": "GCA_000730585.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 82.3469, "matched_fragments": 1053, "total_fragments": 2056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=DSM 22348", "accession": "GCA_900188455.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 82.2032, "matched_fragments": 1083, "total_fragments": 2056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bharatica", "strain": "strain=CSV86", "accession": "GCA_000319305.2", "taxid": 2692112, "species_taxid": 2692112, "relation_to_type": "type", "validated": true, "ani": 81.9713, "matched_fragments": 1004, "total_fragments": 2056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 81.8292, "matched_fragments": 1039, "total_fragments": 2056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 81.8289, "matched_fragments": 1085, "total_fragments": 2056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=ATCC 12633", "accession": 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }