{ "type": "genome", "identifier": "GCF_016892765.1", "organism": "Microvirga arvi", "title": "Microvirga arvi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016892765.1", "bioproject": "PRJNA224116", "biosample": "SAMN16384072", "wgs_master": "JAFEMD000000000.1", "refseq_category": "reference genome", "taxid": "2778731", "species_taxid": "2778731", "organism_name": "Microvirga arvi", "infraspecific_name": "strain=BT689", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/15", "asm_name": "ASM1689276v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_016892765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/892/765/GCF_016892765.1_ASM1689276v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6462601", "genome_size_ungapped": "6462601", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "230", "contig_count": "230", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016892765.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6168", "protein_coding_gene_count": "5948", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-15", "dateModified": "2021-02-15", "datePublished": "2021-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga arvi" ], "sample_taxid": [ "2778731" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeongseon-gun" 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"below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 86.249, "matched_fragments": 1181, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga arabica", "strain": "strain=SV2184P", "accession": "GCA_016811235.1", "taxid": 1128671, "species_taxid": 1128671, "relation_to_type": "type", "validated": true, "ani": 86.0004, "matched_fragments": 1215, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga ossetica", "strain": "strain=V5/3M", "accession": "GCA_002741015.1", "taxid": 1882682, "species_taxid": 1882682, "relation_to_type": "type", "validated": true, "ani": 84.742, "matched_fragments": 1313, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 84.7062, "matched_fragments": 956, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerilata", "strain": "strain=5420S-16", "accession": "GCA_016743775.1", "taxid": 670292, "species_taxid": 670292, "relation_to_type": "type", "validated": true, "ani": 84.3363, "matched_fragments": 1167, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga zambiensis", "strain": "strain=WSM3693", "accession": "GCA_016735695.1", "taxid": 1402137, "species_taxid": 1402137, "relation_to_type": "type", "validated": true, "ani": 84.3199, "matched_fragments": 1155, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 84.0167, "matched_fragments": 1150, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 82.7659, "matched_fragments": 882, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 82.3786, "matched_fragments": 891, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, 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78.4587, "matched_fragments": 530, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 78.4403, "matched_fragments": 507, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016892765.1", "gtdb_species": "s__Microvirga sp016892765", "ani": 100.0, "matched_fragments": 2040, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 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