{ "type": "genome", "identifier": "GCF_016894445.1", "organism": "Dyadobacter sandarakinus", "title": "Dyadobacter sandarakinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wuhan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016894445.1", "bioproject": "PRJNA224116", "biosample": "SAMN15339575", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2747268", "species_taxid": "2747268", "organism_name": "Dyadobacter sandarakinus", "infraspecific_name": "strain=Q3-56", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/16", "asm_name": "ASM1689444v1", "asm_submitter": "Wuhan University", "gbrs_paired_asm": "GCA_016894445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/894/445/GCF_016894445.1_ASM1689444v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6071216", "genome_size_ungapped": "6071216", "gc_percent": "49.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016894445.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5072", "protein_coding_gene_count": "5005", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-16", "dateModified": "2021-02-16", "datePublished": "2021-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter sandarakinus" ], "sample_taxid": [ "2747268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway" ], "sample_host_location_id": [], "data_size": "1.724 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6071216", "Number of Sequences": "1", "Longest Sequences (bp)": "6071216", "N50 (bp)": "6071216", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.1", "Number of CDSs": "4963", "Average Protein Length": "363.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "8", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter sandarakinus", "strain": "strain=Q3-56", "accession": "GCA_016894445.1", "taxid": 2747268, "species_taxid": 2747268, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2022, "total_fragments": 2023, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dyadobacter luticola", "strain": "strain=T17", "accession": "GCA_005860805.1", "taxid": 1979387, "species_taxid": 1979387, "relation_to_type": "type", "validated": true, "ani": 78.3123, "matched_fragments": 550, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter crusticola", "strain": "strain=DSM 16708", "accession": "GCA_000701505.1", "taxid": 292407, "species_taxid": 292407, "relation_to_type": "type", "validated": true, "ani": 77.9576, "matched_fragments": 485, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=DSM 21582", "accession": "GCA_000382205.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 77.8578, "matched_fragments": 530, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, "relation_to_type": "type", "validated": true, "ani": 77.8422, "matched_fragments": 434, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=CGMCC 1.6375", "accession": "GCA_014645155.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 77.8415, "matched_fragments": 522, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, "relation_to_type": "type", "validated": true, "ani": 77.8333, "matched_fragments": 415, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 2572203, "relation_to_type": "type", "validated": true, "ani": 77.7372, "matched_fragments": 423, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter flavalbus", "strain": "strain=NS28", "accession": "GCA_006149045.1", "taxid": 2579942, "species_taxid": 2579942, "relation_to_type": "type", "validated": true, "ani": 77.7275, "matched_fragments": 497, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter jiangsuensis", "strain": "strain=DSM 29057", "accession": "GCA_003014695.1", "taxid": 1591085, "species_taxid": 1591085, "relation_to_type": "type", "validated": true, "ani": 77.6608, "matched_fragments": 484, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter endophyticus", "strain": "strain=CGMCC 1.15288", "accession": "GCA_014641595.1", "taxid": 1749036, "species_taxid": 1749036, "relation_to_type": "type", "validated": true, "ani": 77.6603, "matched_fragments": 463, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=Z12", "accession": "GCA_005860765.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 77.5933, "matched_fragments": 525, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=CGMCC 1.12895", "accession": "GCA_014640015.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 77.5827, "matched_fragments": 532, "total_fragments": 2023, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016894445.1", "gtdb_species": 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