{ "type": "genome", "identifier": "GCF_016900875.1", "organism": "Vibrio ulleungensis", "title": "Vibrio ulleungensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hannam University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016900875.1", "bioproject": "PRJNA224116", "biosample": "SAMN17718628", "wgs_master": "JAFEUM000000000.1", "refseq_category": "reference genome", "taxid": "2807619", "species_taxid": "2807619", "organism_name": "Vibrio ulleungensis", "infraspecific_name": "strain=188UL20-2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/16", "asm_name": "ASM1690087v1", "asm_submitter": "Hannam University", "gbrs_paired_asm": "GCA_016900875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/900/875/GCF_016900875.1_ASM1690087v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4380046", "genome_size_ungapped": "4379857", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016900875.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4050", "protein_coding_gene_count": "3923", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-16", "dateModified": "2021-02-16", "datePublished": "2021-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio ulleungensis" ], "sample_taxid": [ "2807619" ], "sample_host_organism": [ "mussel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Ulleung Island" ], "sample_host_location_id": [], "data_size": "1.254 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4380046", "Number of Sequences": "25", "Longest Sequences (bp)": "1082719", "N50 (bp)": "494057", "Gap Ratio (%)": "0.004315", "GCcontent (%)": "45.4", "Number of CDSs": "3954", "Average Protein Length": "321.6", "Coding Ratio (%)": "87.1", "Number of rRNAs": "6", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio ulleungensis", "strain": "strain=188UL20-2", "accession": "GCA_016900875.1", "taxid": 2807619, "species_taxid": 2807619, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1447, "total_fragments": 1447, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio ezurae", "strain": "strain=NBRC 102218", "accession": "GCA_000467185.1", "taxid": 252583, "species_taxid": 252583, "relation_to_type": "type", "validated": true, "ani": 79.4322, "matched_fragments": 189, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ishigakensis", "strain": "strain=JCM 19231", "accession": "GCA_024347675.1", "taxid": 1481914, "species_taxid": 1481914, "relation_to_type": "type", "validated": true, "ani": 79.2821, "matched_fragments": 198, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio comitans", "strain": "strain=LMG 23416", "accession": "GCA_024346835.1", "taxid": 413401, "species_taxid": 413401, "relation_to_type": "type", "validated": true, "ani": 79.2462, "matched_fragments": 194, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ezurae", "strain": "strain=HDS1-1", "accession": "GCA_003568985.1", "taxid": 252583, "species_taxid": 252583, "relation_to_type": "type", "validated": true, "ani": 79.2207, "matched_fragments": 201, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 79.2137, "matched_fragments": 195, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 79.1831, "matched_fragments": 196, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio toranzoniae", "strain": "strain=CECT 7225", "accession": "GCA_024347655.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, "ani": 79.1459, "matched_fragments": 181, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliilyticus", "strain": "strain=ATCC BAA-450", "accession": "GCA_000176135.1", "taxid": 190893, "species_taxid": 190893, "relation_to_type": "type", "validated": true, "ani": 79.1363, "matched_fragments": 184, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1039, "matched_fragments": 200, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio comitans", "strain": "strain=NBRC 102076", "accession": "GCA_006538565.1", "taxid": 413401, "species_taxid": 413401, "relation_to_type": "type", "validated": true, "ani": 79.0536, "matched_fragments": 188, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hippocampi", "strain": "strain=CECT 8226", "accession": "GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 78.9878, "matched_fragments": 197, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 78.9728, "matched_fragments": 193, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pomeroyi", "strain": "strain=LMG 20537", "accession": "GCA_024347595.1", "taxid": 198832, "species_taxid": 198832, "relation_to_type": "type", "validated": true, "ani": 78.9718, "matched_fragments": 207, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio halioticoli", "strain": "strain=IAM 14596", "accession": "GCA_003568965.1", "taxid": 71388, "species_taxid": 71388, "relation_to_type": "type", "validated": true, "ani": 78.9418, "matched_fragments": 204, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LMG 22741", "accession": "GCA_024347515.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 78.938, "matched_fragments": 195, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio halioticoli", "strain": "strain=NBRC 102217", "accession": "GCA_000496695.1", "taxid": 71388, "species_taxid": 71388, "relation_to_type": "type", "validated": true, "ani": 78.9312, "matched_fragments": 192, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=ATCC 14048", "accession": "GCA_000417905.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 78.7948, "matched_fragments": 175, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 78.7657, "matched_fragments": 188, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 78.7497, "matched_fragments": 183, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tasmaniensis", "strain": "strain=LMG 20012", "accession": "GCA_024347635.1", "taxid": 212663, "species_taxid": 212663, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7438, "matched_fragments": 199, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 78.6175, "matched_fragments": 185, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ziniensis", "strain": "strain=ZWAL4003", "accession": "GCA_011064285.1", "taxid": 2711221, "species_taxid": 2711221, "relation_to_type": "type", "validated": true, "ani": 78.6092, "matched_fragments": 167, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio harveyi", "strain": "strain=NBRC 15634", "accession": "GCA_001591145.1", "taxid": 669, "species_taxid": 669, "relation_to_type": "type", "validated": true, "ani": 78.5533, "matched_fragments": 183, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 78.3809, "matched_fragments": 167, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio navarrensis", "strain": "strain=ATCC 51183", "accession": "GCA_000764325.1", "taxid": 29495, "species_taxid": 29495, "relation_to_type": "type", "validated": true, "ani": 78.3157, "matched_fragments": 168, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio metoecus", "strain": "strain=OP3H", "accession": "GCA_000696385.1", "taxid": 1481663, "species_taxid": 1481663, "relation_to_type": "type", "validated": true, "ani": 77.9849, "matched_fragments": 151, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016900875.1", "gtdb_species": "s__Vibrio sp016900875", "ani": 100.0, "matched_fragments": 1447, "total_fragments": 1447, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002100145.1", "gtdb_species": "s__Vibrio sp002100145", "ani": 92.9886, "matched_fragments": 1190, "total_fragments": 1447, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000467185.1", "gtdb_species": "s__Vibrio ezurae", "ani": 79.4529, "matched_fragments": 190, "total_fragments": 1447, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000176135.1", "gtdb_species": "s__Vibrio coralliilyticus", "ani": 79.1627, "matched_fragments": 182, "total_fragments": 1447, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, 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