{ "type": "genome", "identifier": "GCF_016900955.1", "organism": "Micromonospora humidisoli", "title": "Micromonospora humidisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chungnam National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016900955.1", "bioproject": "PRJNA224116", "biosample": "SAMN17735269", "wgs_master": "JAFEUO000000000.1", "refseq_category": "reference genome", "taxid": "2807622", "species_taxid": "2807622", "organism_name": "Micromonospora humidisoli", "infraspecific_name": "strain=MMS20-R2-29", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/16", "asm_name": "ASM1690095v1", "asm_submitter": "Chungnam National University", "gbrs_paired_asm": "GCA_016900955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/900/955/GCF_016900955.1_ASM1690095v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7129911", "genome_size_ungapped": "7129817", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016900955.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6254", "protein_coding_gene_count": "6110", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-16", "dateModified": "2021-02-16", "datePublished": "2021-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora humidisoli" ], "sample_taxid": [ "2807622" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Sejong-si" ], "sample_host_location_id": [], "data_size": "1.876 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7129911", "Number of Sequences": "26", "Longest Sequences (bp)": "1276008", "N50 (bp)": "885464", "Gap Ratio (%)": "0.001318", "GCcontent (%)": "72.9", "Number of CDSs": "6255", "Average Protein Length": "340.7", "Coding Ratio (%)": "89.7", "Number of rRNAs": "2", "Number of tRNAs": "76", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora wenchangensis", "strain": "strain=CCTCC AA 2012002", "accession": "GCA_002210435.1", "taxid": 1185415, "species_taxid": 1185415, "relation_to_type": "type", "validated": true, "ani": 95.3973, "matched_fragments": 1973, "total_fragments": 2366, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 95.2985, "matched_fragments": 2030, "total_fragments": 2366, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora matsumotoense", "strain": "strain=DSM 44100", "accession": "GCA_900091525.1", "taxid": 121616, "species_taxid": 121616, "relation_to_type": "type", "validated": true, "ani": 92.0044, "matched_fragments": 1940, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 91.664, "matched_fragments": 1899, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 91.6234, "matched_fragments": 1713, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora halophytica", "strain": "strain=DSM 43171", "accession": "GCA_900090245.1", "taxid": 47864, "species_taxid": 47864, "relation_to_type": "type", "validated": true, "ani": 86.3429, "matched_fragments": 1433, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora haikouensis", "strain": "strain=DSM 45626", "accession": "GCA_900091595.1", "taxid": 686309, "species_taxid": 686309, "relation_to_type": "type", "validated": true, "ani": 85.6869, "matched_fragments": 1621, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43168", "accession": "GCA_900091535.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.6511, "matched_fragments": 1643, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.604, "matched_fragments": 1650, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.0538, "matched_fragments": 1041, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 84.7602, "matched_fragments": 1466, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 84.4352, "matched_fragments": 1236, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora nigra", "strain": "strain=DSM 43818", "accession": "GCA_900091585.1", "taxid": 145857, "species_taxid": 145857, "relation_to_type": "type", "validated": true, "ani": 83.8209, "matched_fragments": 1344, "total_fragments": 2366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fiedleri", "strain": 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