{ "type": "genome", "identifier": "GCF_016901255.1", "organism": "Micromonospora humida", "title": "Micromonospora humida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chungnam National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016901255.1", "bioproject": "PRJNA224116", "biosample": "SAMN17765417", "wgs_master": "JAFEUC000000000.1", "refseq_category": "reference genome", "taxid": "2809018", "species_taxid": "2809018", "organism_name": "Micromonospora humida", "infraspecific_name": "strain=MMS20-R1-14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/16", "asm_name": "ASM1690125v1", "asm_submitter": "Chungnam National University", "gbrs_paired_asm": "GCA_016901255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/901/255/GCF_016901255.1_ASM1690125v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7367510", "genome_size_ungapped": "7367510", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016901255.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6411", "protein_coding_gene_count": "6249", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-16", "dateModified": "2021-02-16", "datePublished": "2021-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora humida" ], "sample_taxid": [ "2809018" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Sejong-si" ], "sample_host_location_id": [], "data_size": "1.940 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7367510", "Number of Sequences": "42", "Longest Sequences (bp)": "950572", "N50 (bp)": "408962", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.9", "Number of CDSs": "6445", "Average Protein Length": "341.0", "Coding Ratio (%)": "89.5", "Number of rRNAs": "4", "Number of tRNAs": "74", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2428, "total_fragments": 2430, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora wenchangensis", "strain": "strain=CCTCC AA 2012002", "accession": "GCA_002210435.1", "taxid": 1185415, "species_taxid": 1185415, "relation_to_type": "type", "validated": true, "ani": 96.0117, "matched_fragments": 2056, "total_fragments": 2430, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora matsumotoense", "strain": "strain=DSM 44100", "accession": "GCA_900091525.1", "taxid": 121616, "species_taxid": 121616, "relation_to_type": "type", "validated": true, "ani": 92.1667, "matched_fragments": 2008, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 91.6595, "matched_fragments": 1938, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 91.5817, "matched_fragments": 1746, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora halophytica", "strain": "strain=DSM 43171", "accession": "GCA_900090245.1", "taxid": 47864, "species_taxid": 47864, "relation_to_type": "type", "validated": true, "ani": 86.4867, "matched_fragments": 1428, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora haikouensis", "strain": "strain=DSM 45626", "accession": "GCA_900091595.1", "taxid": 686309, "species_taxid": 686309, "relation_to_type": "type", "validated": true, "ani": 85.8358, "matched_fragments": 1655, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.0028, "matched_fragments": 1059, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 84.8915, "matched_fragments": 1505, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 84.4751, "matched_fragments": 1256, "total_fragments": 2430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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29.972, "optimum_ph": 7.268, "genome_size": 6974886.426, "gc_content": 72.396, "coding_genes": 6227.25, "rRNA16S_genes": 3.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.2, "coccus_cell_shape": 0.4, "filament_cell_shape": 0.4, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Micromonospora", "humida" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }