{
    "type": "genome",
    "identifier": "GCF_016907015.1",
    "organism": "Oceanisphaera litoralis",
    "title": "Oceanisphaera litoralis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016907015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17620117",
        "wgs_master": "JAFBBE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "225144",
        "species_taxid": "225144",
        "organism_name": "Oceanisphaera litoralis",
        "infraspecific_name": "strain=DSM 15406",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/19",
        "asm_name": "ASM1690701v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_016907015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/907/015/GCF_016907015.1_ASM1690701v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3356276",
        "genome_size_ungapped": "3355789",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "63",
        "contig_count": "63",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016907015.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3216",
        "protein_coding_gene_count": "3084",
        "non_coding_gene_count": "91",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-19",
    "dateModified": "2021-02-19",
    "datePublished": "2021-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oceanisphaera litoralis"
        ],
        "sample_taxid": [
            "225144"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Sea of Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.948 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3356276",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "239347",
        "N50 (bp)": "114352",
        "Gap Ratio (%)": "0.014510",
        "GCcontent (%)": "58.5",
        "Number of CDSs": "3142",
        "Average Protein Length": "311.5",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "79",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Oceanisphaera litoralis",
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                "taxid": 225144,
                "species_taxid": 225144,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1089,
                "total_fragments": 1091,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Oceanisphaera arctica",
                "strain": "strain=KCTC 23013",
                "accession": "GCA_014652055.1",
                "taxid": 641510,
                "species_taxid": 641510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8564,
                "matched_fragments": 843,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera arctica",
                "strain": "strain=V1-41",
                "accession": "GCA_002936955.1",
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                "species_taxid": 641510,
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                "validated": true,
                "ani": 89.7741,
                "matched_fragments": 827,
                "total_fragments": 1091,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera psychrotolerans",
                "strain": "strain=LAM-WHM-ZC",
                "accession": "GCA_001870485.1",
                "taxid": 1414654,
                "species_taxid": 1414654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.059,
                "matched_fragments": 816,
                "total_fragments": 1091,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellella endophytica",
                "strain": "strain=59N8",
                "accession": "GCA_003012775.1",
                "taxid": 2116700,
                "species_taxid": 2116700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0272,
                "matched_fragments": 743,
                "total_fragments": 1091,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellella denitrificans",
                "strain": "strain=ZD1",
                "accession": "GCA_002237365.1",
                "taxid": 347534,
                "species_taxid": 347534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0216,
                "matched_fragments": 705,
                "total_fragments": 1091,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanimonas marisflavi",
                "strain": "strain=102-Na3",
                "accession": "GCA_003049725.1",
                "taxid": 2059724,
                "species_taxid": 2059724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8963,
                "matched_fragments": 692,
                "total_fragments": 1091,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanimonas doudoroffii",
                "strain": "strain=ATCC 27123",
                "accession": "GCA_002242685.1",
                "taxid": 84158,
                "species_taxid": 84158,
                "relation_to_type": "type",
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                "matched_fragments": 711,
                "total_fragments": 1091,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera marina",
                "strain": "strain=CGMCC 1.15923",
                "accession": "GCA_014643915.1",
                "taxid": 2017550,
                "species_taxid": 2017550,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2244,
                "matched_fragments": 639,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanimonas smirnovii",
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                "accession": "GCA_000381965.1",
                "taxid": 264574,
                "species_taxid": 264574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6388,
                "matched_fragments": 571,
                "total_fragments": 1091,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
                "strain": "strain=MAP12",
                "accession": "GCA_019097855.1",
                "taxid": 2849492,
                "species_taxid": 2849492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5574,
                "matched_fragments": 129,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3409,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
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                "ani": 76.2737,
                "matched_fragments": 115,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
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                "ani": 76.2113,
                "matched_fragments": 161,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas mangiferae",
                "strain": "strain=DMKU BBB3-04",
                "accession": "GCA_007109405.1",
                "taxid": 2593654,
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                "relation_to_type": "type",
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                "ani": 76.0063,
                "matched_fragments": 115,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_016907015.1",
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                "matched_fragments": 1089,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "litoralis"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}