{ "type": "genome", "identifier": "GCF_016907495.1", "organism": "Arthrobacter tumbae", "title": "Arthrobacter tumbae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016907495.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619947", "wgs_master": "JAFBCC000000000.1", "refseq_category": "reference genome", "taxid": "163874", "species_taxid": "163874", "organism_name": "Arthrobacter tumbae", "infraspecific_name": "strain=DSM 16406", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690749v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016907495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/907/495/GCF_016907495.1_ASM1690749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3703121", "genome_size_ungapped": "3703121", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016907495.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3500", "protein_coding_gene_count": "3415", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter tumbae" ], "sample_taxid": [ "163874" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Carmona" ], "sample_host_location_id": [], "data_size": "1.034 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3703121", "Number of Sequences": "1", "Longest Sequences (bp)": "3703121", "N50 (bp)": "3703121", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "3490", "Average Protein Length": "321.0", "Coding Ratio (%)": "90.8", "Number of rRNAs": "9", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter tumbae", "strain": "strain=DSM 16406", "accession": "GCA_016907495.1", "taxid": 163874, "species_taxid": 163874, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1233, "total_fragments": 1234, "ani_threshold": 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