{ "type": "genome", "identifier": "GCF_016907715.1", "organism": "Tenggerimyces flavus", "title": "Tenggerimyces flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016907715.1", "bioproject": "PRJNA224116", "biosample": "SAMN17620043", "wgs_master": "JAFBCM000000000.1", "refseq_category": "reference genome", "taxid": "1708749", "species_taxid": "1708749", "organism_name": "Tenggerimyces flavus", "infraspecific_name": "strain=DSM 28944", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690771v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016907715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/907/715/GCF_016907715.1_ASM1690771v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8519422", "genome_size_ungapped": "8519422", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016907715.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8008", "protein_coding_gene_count": "7852", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Tenggerimyces flavus" ], "sample_taxid": [ "1708749" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.295 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8519422", "Number of Sequences": "1", "Longest Sequences (bp)": "8519422", "N50 (bp)": "8519422", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "8076", "Average Protein Length": "319.3", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tenggerimyces flavus", "strain": "strain=DSM 28944", "accession": "GCA_016907715.1", "taxid": 1708749, "species_taxid": 1708749, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2838, "total_fragments": 2839, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinopolymorpha rutila", "strain": "strain=DSM 18448", "accession": "GCA_013407855.1", "taxid": 446787, "species_taxid": 446787, "relation_to_type": "type", "validated": true, "ani": 78.4756, "matched_fragments": 803, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha cephalotaxi", "strain": "strain=DSM 45117", "accession": "GCA_013408535.1", "taxid": 504797, "species_taxid": 504797, "relation_to_type": "type", "validated": true, "ani": 78.4695, "matched_fragments": 810, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha singaporensis", "strain": "strain=DSM 22024", "accession": "GCA_900104745.1", "taxid": 117157, "species_taxid": 117157, "relation_to_type": "type", "validated": true, "ani": 78.3416, "matched_fragments": 789, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha alba", "strain": "strain=DSM 45243", "accession": "GCA_000373925.1", "taxid": 533267, "species_taxid": 533267, "relation_to_type": "type", "validated": true, "ani": 77.9888, "matched_fragments": 760, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha pittospori", "strain": "strain=DSM 45354", "accession": "GCA_014873875.1", "taxid": 648752, "species_taxid": 648752, "relation_to_type": "type", "validated": true, "ani": 77.904, "matched_fragments": 846, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermasporomyces composti", "strain": "strain=DSM 22891", "accession": "GCA_003386795.1", "taxid": 696763, "species_taxid": 696763, "relation_to_type": "type", "validated": true, "ani": 77.8332, "matched_fragments": 552, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 77.2002, "matched_fragments": 677, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 77.1243, "matched_fragments": 528, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 77.0768, "matched_fragments": 664, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.0608, "matched_fragments": 520, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 76.9876, "matched_fragments": 712, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 76.9851, "matched_fragments": 671, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rotundus", "strain": "strain=MCCC 1A10561", "accession": "GCA_019931675.1", "taxid": 1774216, "species_taxid": 1774216, "relation_to_type": "type", "validated": true, "ani": 76.8939, "matched_fragments": 363, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 76.6641, "matched_fragments": 478, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella gansuensis", "strain": "strain=DSM 44835", "accession": "GCA_000515395.1", "taxid": 281473, "species_taxid": 281473, "relation_to_type": "type", "validated": true, "ani": 76.6108, "matched_fragments": 487, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella asiatica", "strain": "strain=5K138", "accession": "GCA_004349065.1", "taxid": 2530372, "species_taxid": 2530372, "relation_to_type": "type", "validated": true, "ani": 76.5843, "matched_fragments": 581, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella endophytica", "strain": "strain=KE2-3", "accession": "GCA_003427025.1", "taxid": 1623398, "species_taxid": 1623398, "relation_to_type": "type", "validated": true, "ani": 76.4594, "matched_fragments": 684, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura harenae", "strain": "strain=NEAU-Ht49", "accession": "GCA_003696215.1", "taxid": 2483351, "species_taxid": 2483351, "relation_to_type": "type", "validated": true, "ani": 76.2959, "matched_fragments": 574, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava coleopterorum", "strain": "strain=HDW11", "accession": "GCA_011393335.1", "taxid": 2714937, "species_taxid": 2714937, "relation_to_type": "type", "validated": true, "ani": 76.1428, "matched_fragments": 271, "total_fragments": 2839, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016907715.1", "gtdb_species": "s__Tenggerimyces flavus", "ani": 100.0, "matched_fragments": 2839, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Actinopolymorphaceae;g__Tenggerimyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013407855.1", "gtdb_species": "s__Actinopolymorpha rutila", "ani": 78.4793, "matched_fragments": 801, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Actinopolymorphaceae;g__Actinopolymorpha", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013408535.1", "gtdb_species": "s__Actinopolymorpha cephalotaxi", "ani": 78.4708, "matched_fragments": 813, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Actinopolymorphaceae;g__Actinopolymorpha", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900104745.1", "gtdb_species": "s__Actinopolymorpha singaporensis", "ani": 78.3324, "matched_fragments": 791, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Actinopolymorphaceae;g__Actinopolymorpha", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000373925.1", "gtdb_species": "s__Actinopolymorpha alba", "ani": 77.9745, "matched_fragments": 763, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Actinopolymorphaceae;g__Actinopolymorpha", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014873875.1", "gtdb_species": "s__Actinopolymorpha pittospori", "ani": 77.8901, "matched_fragments": 850, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Actinopolymorphaceae;g__Actinopolymorpha", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386795.1", "gtdb_species": "s__Thermasporomyces composti", "ani": 77.819, "matched_fragments": 555, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Actinopolymorphaceae;g__Thermasporomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.77", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004168035.1", "gtdb_species": "s__Nocardioides_B iriomotensis", "ani": 77.1304, "matched_fragments": 527, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217565.1", "gtdb_species": "s__Kribbella qitaiheensis", "ani": 77.0784, "matched_fragments": 558, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004331435.1", "gtdb_species": "s__Kribbella sindirgiensis", "ani": 76.9885, "matched_fragments": 670, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000515395.1", "gtdb_species": "s__Jiangella gansuensis", "ani": 76.6252, "matched_fragments": 484, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428125.1", "gtdb_species": "s__Nocardioides sp001428125", "ani": 76.624, "matched_fragments": 388, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349065.1", "gtdb_species": "s__Jiangella asiatica", "ani": 76.5647, "matched_fragments": 585, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003427025.1", "gtdb_species": "s__Jiangella endophytica", "ani": 76.4335, "matched_fragments": 691, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011393335.1", "gtdb_species": "s__Brevilactibacter coleopterorum", "ani": 76.1305, "matched_fragments": 273, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Brevilactibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002128305.1", "gtdb_species": "s__Streptomyces sp002128305", "ani": 76.1133, "matched_fragments": 446, "total_fragments": 2839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Tenggerimyces", "flavus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }