{ "type": "genome", "identifier": "GCF_016907735.1", "organism": "Brevibacterium paucivorans", "title": "Brevibacterium paucivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016907735.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619979", "wgs_master": "JAFBCP000000000.1", "refseq_category": "reference genome", "taxid": "170994", "species_taxid": "170994", "organism_name": "Brevibacterium paucivorans", "infraspecific_name": "strain=DSM 13657", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690773v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016907735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/907/735/GCF_016907735.1_ASM1690773v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2410104", "genome_size_ungapped": "2410104", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-03-14", "total_gene_count": "2231", "protein_coding_gene_count": "2151", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium paucivorans" ], "sample_taxid": [ "170994" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.682 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2410104", "Number of Sequences": "1", "Longest Sequences (bp)": "2410104", "N50 (bp)": "2410104", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "2214", "Average Protein Length": "331.5", "Coding Ratio (%)": "91.4", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium paucivorans", "strain": "strain=DSM 13657", "accession": "GCA_016907735.1", "taxid": 170994, "species_taxid": 170994, "relation_to_type": "type", "validated": true, "ani": 100.0, 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803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium atlanticum", "strain": "strain=WO024", "accession": "GCA_011617245.1", "taxid": 2697563, "species_taxid": 2697563, "relation_to_type": "type", "validated": true, "ani": 77.8383, "matched_fragments": 84, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium marinum", "strain": "strain=DSM 18964", "accession": "GCA_011927955.1", "taxid": 418643, "species_taxid": 418643, "relation_to_type": "type", "validated": true, "ani": 77.6539, "matched_fragments": 78, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": "GCA_021117425.1", "taxid": 2898795, "species_taxid": 2898795, "relation_to_type": "type", "validated": true, "ani": 77.4733, "matched_fragments": 85, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium permense", "strain": "strain=VKM Ac-2280", "accession": "GCA_013280495.1", "taxid": 234834, "species_taxid": 234834, "relation_to_type": "type", "validated": true, "ani": 77.3229, "matched_fragments": 83, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 77.2394, "matched_fragments": 84, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium casei", "strain": "strain=FDAARGOS_936", "accession": "GCA_016026595.1", "taxid": 33889, "species_taxid": 33889, "relation_to_type": "type", "validated": true, "ani": 77.1932, "matched_fragments": 88, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium aurantiacum", "strain": "strain=ATCC 9175", "accession": "GCA_900169065.1", "taxid": 273384, "species_taxid": 273384, "relation_to_type": "type", "validated": true, "ani": 77.0683, "matched_fragments": 87, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium luteolum", "strain": "strain=DSM 15022", "accession": "GCA_016907415.1", "taxid": 199591, "species_taxid": 199591, "relation_to_type": "type", "validated": true, "ani": 77.04, "matched_fragments": 117, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium gallinarum", "strain": "strain=Re57", "accession": "GCA_014836885.1", "taxid": 2762220, "species_taxid": 2762220, "relation_to_type": "type", "validated": true, "ani": 76.8598, "matched_fragments": 109, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=FXJ8.269", "accession": "GCA_013623905.1", 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