{ "type": "genome", "identifier": "GCF_016907795.1", "organism": "Kocuria palustris", "title": "Kocuria palustris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016907795.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619998", "wgs_master": "JAFBCR000000000.1", "refseq_category": "reference genome", "taxid": "71999", "species_taxid": "71999", "organism_name": "Kocuria palustris", "infraspecific_name": "strain=TAGA27", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690779v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016907795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/907/795/GCF_016907795.1_ASM1690779v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2897960", "genome_size_ungapped": "2897960", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016907795.1-RS_2024_03_30", "annotation_date": "2024-03-30", "total_gene_count": "2587", "protein_coding_gene_count": "2486", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Kocuria palustris" ], "sample_taxid": [ "71999" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary" ], "sample_host_location_id": [], "data_size": "0.776 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2897960", "Number of Sequences": "1", "Longest Sequences (bp)": "2897960", "N50 (bp)": "2897960", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.2", "Number of CDSs": "2563", "Average Protein Length": "335.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "9", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kocuria palustris", "strain": "strain=TAGA27", "accession": "GCA_016907795.1", "taxid": 71999, "species_taxid": 71999, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 965, "total_fragments": 965, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kocuria coralli", "strain": "strain=SCSIO 13007", "accession": "GCA_008831305.1", "taxid": 1461025, "species_taxid": 1461025, "relation_to_type": "type", "validated": true, "ani": 80.3528, "matched_fragments": 468, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria flava", "strain": "strain=HO-9041", "accession": "GCA_001482365.1", "taxid": 446860, "species_taxid": 446860, "relation_to_type": "type", "validated": true, "ani": 80.1873, "matched_fragments": 467, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria soli", "strain": "strain=M5W7-7", "accession": "GCA_003797835.1", "taxid": 2485125, "species_taxid": 2485125, "relation_to_type": "type", "validated": true, "ani": 80.1357, "matched_fragments": 442, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria tytonis", "strain": "strain=442", "accession": "GCA_003226895.2", "taxid": 2054280, "species_taxid": 2054280, "relation_to_type": "type", "validated": true, "ani": 79.9036, "matched_fragments": 365, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria turfanensis", "strain": "strain=HO-9042", "accession": "GCA_001580365.1", "taxid": 388357, "species_taxid": 388357, "relation_to_type": "type", "validated": true, "ani": 79.8765, "matched_fragments": 461, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria rosea", "strain": "strain=DSM 20447", "accession": "GCA_006717035.1", "taxid": 1275, "species_taxid": 1275, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8287, "matched_fragments": 461, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria dechangensis", "strain": "strain=CGMCC 1.12187", "accession": "GCA_014636775.1", "taxid": 1176249, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 77.7199, "matched_fragments": 225, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.6537, "matched_fragments": 218, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter wenxiniae", "strain": "strain=AETb3-4", "accession": "GCA_013376105.1", "taxid": 2713570, "species_taxid": 2713570, "relation_to_type": "type", "validated": true, "ani": 77.6039, "matched_fragments": 223, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { 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