{
    "type": "genome",
    "identifier": "GCF_016907815.1",
    "organism": "Microbacterium aurum",
    "title": "Microbacterium aurum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016907815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17619949",
        "wgs_master": "JAFBCQ000000000.1",
        "refseq_category": "na",
        "taxid": "36805",
        "species_taxid": "36805",
        "organism_name": "Microbacterium aurum",
        "infraspecific_name": "strain=DSM 8600",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/19",
        "asm_name": "ASM1690781v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_016907815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/907/815/GCF_016907815.1_ASM1690781v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3412446",
        "genome_size_ungapped": "3412446",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016907815.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "3346",
        "protein_coding_gene_count": "3211",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-19",
    "dateModified": "2021-02-19",
    "datePublished": "2021-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbacterium aurum"
        ],
        "sample_taxid": [
            "36805"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.915 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.93,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3412446",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3412446",
        "N50 (bp)": "3412446",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.9",
        "Number of CDSs": "3351",
        "Average Protein Length": "310.5",
        "Coding Ratio (%)": "91.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbacterium aurum",
                "strain": "strain=DSM 8600",
                "accession": "GCA_016907815.1",
                "taxid": 36805,
                "species_taxid": 36805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1137,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microbacterium lacticum",
                "strain": "strain=DSM 20427",
                "accession": "GCA_006716815.1",
                "taxid": 33885,
                "species_taxid": 33885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3442,
                "matched_fragments": 673,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium lacticum",
                "strain": "strain=NBRC 14135",
                "accession": "GCA_006539445.1",
                "taxid": 33885,
                "species_taxid": 33885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2823,
                "matched_fragments": 642,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium lacticum",
                "strain": "strain=JCM 1379",
                "accession": "GCA_014646835.1",
                "taxid": 33885,
                "species_taxid": 33885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2435,
                "matched_fragments": 652,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium paulum",
                "strain": "strain=2C",
                "accession": "GCA_015707995.1",
                "taxid": 2707006,
                "species_taxid": 2707006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9487,
                "matched_fragments": 649,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hominis",
                "strain": "strain=LCDC 84-0209",
                "accession": "GCA_001553805.1",
                "taxid": 162426,
                "species_taxid": 162426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8981,
                "matched_fragments": 660,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hominis",
                "strain": "strain=NBRC 15708",
                "accession": "GCA_001592125.1",
                "taxid": 162426,
                "species_taxid": 162426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8409,
                "matched_fragments": 653,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium laevaniformans",
                "strain": "strain=DSM 20140",
                "accession": "GCA_016907555.1",
                "taxid": 36807,
                "species_taxid": 36807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0889,
                "matched_fragments": 659,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium dextranolyticum",
                "strain": "strain=DSM 8607",
                "accession": "GCA_016907295.1",
                "taxid": 36806,
                "species_taxid": 36806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8118,
                "matched_fragments": 635,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium telephonicum",
                "strain": "strain=S2T63",
                "accession": "GCA_003651225.1",
                "taxid": 1714841,
                "species_taxid": 1714841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8086,
                "matched_fragments": 645,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium flavum",
                "strain": "strain=DSM 18909",
                "accession": "GCA_018717645.1",
                "taxid": 415216,
                "species_taxid": 415216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7958,
                "matched_fragments": 658,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium invictum",
                "strain": "strain=DSM 19600",
                "accession": "GCA_023155715.1",
                "taxid": 515415,
                "species_taxid": 515415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6128,
                "matched_fragments": 581,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium invictum",
                "strain": "strain=JCM 17023",
                "accession": "GCA_015278285.1",
                "taxid": 515415,
                "species_taxid": 515415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5711,
                "matched_fragments": 579,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hibisci",
                "strain": "strain=CCTCC AB 2016180",
                "accession": "GCA_015278255.1",
                "taxid": 2036000,
                "species_taxid": 2036000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2569,
                "matched_fragments": 585,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium gallinarum",
                "strain": "strain=Sa1CUA4",
                "accession": "GCA_014837165.1",
                "taxid": 2762209,
                "species_taxid": 2762209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2077,
                "matched_fragments": 557,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium yannicii",
                "strain": "strain=DSM 23203",
                "accession": "GCA_024055635.1",
                "taxid": 671622,
                "species_taxid": 671622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.743,
                "matched_fragments": 576,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.93,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016907815.1",
                "gtdb_species": "s__Microbacterium aurum",
                "ani": 100.0,
                "matched_fragments": 1137,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "96.17",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_006716815.1",
                "gtdb_species": "s__Microbacterium lacticum",
                "ani": 84.2696,
                "matched_fragments": 675,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_001898315.1",
                "gtdb_species": "s__Microbacterium sp001898315",
                "ani": 84.2258,
                "matched_fragments": 678,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_015707995.1",
                "gtdb_species": "s__Microbacterium sp015707995",
                "ani": 83.9693,
                "matched_fragments": 648,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592125.1",
                "gtdb_species": "s__Microbacterium hominis",
                "ani": 83.8526,
                "matched_fragments": 652,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017305435.1",
                "gtdb_species": "s__Microbacterium sp017305435",
                "ani": 83.6331,
                "matched_fragments": 655,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003248655.1",
                "gtdb_species": "s__Microbacterium sp003248655",
                "ani": 83.5077,
                "matched_fragments": 637,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016807485.1",
                "gtdb_species": "s__Microbacterium sp016807485",
                "ani": 83.1014,
                "matched_fragments": 410,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016907555.1",
                "gtdb_species": "s__Microbacterium laevaniformans",
                "ani": 83.1014,
                "matched_fragments": 660,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.33",
                "min_intra_species_ani": "96.04",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_016907295.1",
                "gtdb_species": "s__Microbacterium dextranolyticum",
                "ani": 82.857,
                "matched_fragments": 631,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003293595.1",
                "gtdb_species": "s__Microbacterium sp003293595",
                "ani": 82.8515,
                "matched_fragments": 616,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "97.59",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003651225.1",
                "gtdb_species": "s__Microbacterium telephonicum",
                "ani": 82.8209,
                "matched_fragments": 644,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018717645.1",
                "gtdb_species": "s__Microbacterium flavum",
                "ani": 82.7958,
                "matched_fragments": 658,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001724425.1",
                "gtdb_species": "s__Microbacterium sp001724425",
                "ani": 82.768,
                "matched_fragments": 610,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003248845.1",
                "gtdb_species": "s__Microbacterium sp003248845",
                "ani": 82.6611,
                "matched_fragments": 433,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007828185.1",
                "gtdb_species": "s__Microbacterium sp007828185",
                "ani": 81.8097,
                "matched_fragments": 593,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.344,
        "cell_length": -0.025,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 29.019,
        "optimum_ph": 7.341,
        "genome_size": 3424890.667,
        "gc_content": 69.9,
        "coding_genes": 3095.5,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 1.0,
        "sporulation": 0.111,
        "motility": 0.289,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.977,
        "coccus_cell_shape": 0.022,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Microbacterium",
        "aurum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}