{ "type": "genome", "identifier": "GCF_016907875.1", "organism": "Arthrobacter roseus", "title": "Arthrobacter roseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016907875.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619976", "wgs_master": "JAFBCU000000000.1", "refseq_category": "reference genome", "taxid": "136274", "species_taxid": "136274", "organism_name": "Arthrobacter roseus", "infraspecific_name": "strain=DSM 14508", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690787v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016907875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/907/875/GCF_016907875.1_ASM1690787v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3076990", "genome_size_ungapped": "3076990", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016907875.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3011", "protein_coding_gene_count": "2911", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter roseus" ], "sample_taxid": [ "136274" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "0.871 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3076990", "Number of Sequences": "1", "Longest Sequences (bp)": "3076990", "N50 (bp)": "3076990", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.1", "Number of CDSs": "2963", "Average Protein Length": "312.2", "Coding Ratio (%)": "90.2", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter roseus", "strain": "strain=DSM 14508", "accession": "GCA_016907875.1", "taxid": 136274, "species_taxid": 136274, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1024, "total_fragments": 1025, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenarthrobacter ilicis", "strain": "strain=DSM 20138", "accession": "GCA_016907545.1", "taxid": 43665, "species_taxid": 43665, "relation_to_type": "type", "validated": true, "ani": 77.9992, "matched_fragments": 134, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter phenanthrenivorans", "strain": "strain=Sphe3", "accession": "GCA_000189535.1", "taxid": 361575, "species_taxid": 361575, "relation_to_type": "type", "validated": true, "ani": 77.8853, "matched_fragments": 124, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.8233, "matched_fragments": 152, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter crystallopoietes", "strain": "strain=DSM 20117", "accession": "GCA_002849715.1", "taxid": 37928, "species_taxid": 37928, "relation_to_type": "type", "validated": true, "ani": 77.6828, "matched_fragments": 155, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella halotolerans", "strain": "strain=DSM 17364", "accession": "GCA_004217565.1", "taxid": 370736, "species_taxid": 370736, "relation_to_type": "type", "validated": true, "ani": 77.6614, "matched_fragments": 94, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter luteolus", "strain": "strain=DSM 13067", "accession": "GCA_008973725.1", "taxid": 98672, "species_taxid": 98672, "relation_to_type": "type", "validated": true, "ani": 77.5435, "matched_fragments": 148, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pullicola", "strain": "strain=Sa2BUA2", "accession": "GCA_014836875.1", "taxid": 2762224, "species_taxid": 2762224, "relation_to_type": "type", "validated": true, "ani": 77.4107, "matched_fragments": 140, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter yangruifuii", "strain": "strain=785", "accession": "GCA_009192775.1", "taxid": 2606616, "species_taxid": 2606616, "relation_to_type": "type", "validated": true, "ani": 77.3559, "matched_fragments": 145, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.3424, "matched_fragments": 147, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter citreus", "strain": "strain=DSM 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"type", "validated": true, "ani": 77.0389, "matched_fragments": 156, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 76.9846, "matched_fragments": 152, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter terrae", "strain": "strain=Z1-20", "accession": "GCA_015708085.1", "taxid": 2935737, "species_taxid": 2935737, "relation_to_type": "type", "validated": true, "ani": 76.9798, "matched_fragments": 93, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 76.9517, "matched_fragments": 151, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter crusticola", "strain": "strain=SLN-3", "accession": "GCA_004357995.1", "taxid": 2547960, "species_taxid": 2547960, "relation_to_type": "type", "validated": true, "ani": 76.9491, "matched_fragments": 128, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas notoginsengisoli", "strain": "strain=KCTC 29237", "accession": "GCA_021554725.1", "taxid": 1457311, "species_taxid": 1457311, "relation_to_type": "type", "validated": true, "ani": 76.5145, "matched_fragments": 94, "total_fragments": 1025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella aeris", "strain": "strain=CIP 111667", "accession": "GCA_902703175.1", "taxid": 2761496, "species_taxid": 2761496, "relation_to_type": "type", "validated": true, "ani": 76.4003, "matched_fragments": 51, "total_fragments": 1025, 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"97.65", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017368795.1", "gtdb_species": "s__PO-11 sp017368795", "ani": 77.6, "matched_fragments": 135, "total_fragments": 1025, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__PO-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001422645.1", "gtdb_species": "s__Arthrobacter_I sp001422645", "ani": 77.5254, "matched_fragments": 143, "total_fragments": 1025, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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