{ "type": "genome", "identifier": "GCF_016908015.1", "organism": "Clostridium pascui", "title": "Clostridium pascui", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016908015.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619922", "wgs_master": "JAFBDB000000000.1", "refseq_category": "reference genome", "taxid": "46609", "species_taxid": "46609", "organism_name": "Clostridium pascui", "infraspecific_name": "strain=DSM 10365", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690801v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016908015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/908/015/GCF_016908015.1_ASM1690801v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3828744", "genome_size_ungapped": "3828744", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016908015.1-RS_2024_04_16", "annotation_date": "2024-04-16", "total_gene_count": "3828", "protein_coding_gene_count": "3696", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium pascui" ], "sample_taxid": [ "46609" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pakistan" ], "sample_host_location_id": [], "data_size": "1.052 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3828744", "Number of Sequences": "21", "Longest Sequences (bp)": "929064", "N50 (bp)": "396038", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.2", "Number of CDSs": "3750", "Average Protein Length": "294.2", "Coding Ratio (%)": "86.5", "Number of rRNAs": "4", "Number of tRNAs": "79", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium pascui", "strain": "strain=DSM 10365", "accession": "GCA_016908015.1", "taxid": 46609, "species_taxid": 46609, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1265, "total_fragments": 1267, "ani_threshold": 95, 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"GCA_001020205.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 77.1063, "matched_fragments": 200, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=NCTC13020", "accession": "GCA_900461305.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 77.0417, "matched_fragments": 202, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetani", "strain": "strain=ATCC 19406", "accession": "GCA_000762305.1", "taxid": 1513, "species_taxid": 1513, "relation_to_type": "type", "validated": true, "ani": 77.0269, "matched_fragments": 209, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetani", "strain": "strain=ATCC 19406", "accession": "GCA_900167265.1", "taxid": 1513, "species_taxid": 1513, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 76.4034, "matched_fragments": 110, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=DSM 2631", "accession": "GCA_900129365.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.3973, "matched_fragments": 141, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=NCTC8380", "accession": "GCA_900461065.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.3838, "matched_fragments": 141, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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