{
    "type": "genome",
    "identifier": "GCF_016908115.1",
    "organism": "Peptoniphilus gorbachii",
    "title": "Peptoniphilus gorbachii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016908115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17619987",
        "wgs_master": "JAFBDH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "411567",
        "species_taxid": "411567",
        "organism_name": "Peptoniphilus gorbachii",
        "infraspecific_name": "strain=DSM 21461",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/19",
        "asm_name": "ASM1690811v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_016908115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/908/115/GCF_016908115.1_ASM1690811v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1865235",
        "genome_size_ungapped": "1865235",
        "gc_percent": "31.500000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016908115.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "1829",
        "protein_coding_gene_count": "1760",
        "non_coding_gene_count": "35",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-19",
    "dateModified": "2021-02-19",
    "datePublished": "2021-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Peptoniphilus gorbachii"
        ],
        "sample_taxid": [
            "411567"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.512 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1865235",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "441175",
        "N50 (bp)": "237555",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.4",
        "Number of CDSs": "1796",
        "Average Protein Length": "312.8",
        "Coding Ratio (%)": "90.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Peptoniphilus gorbachii",
                "strain": "strain=DSM 21461",
                "accession": "GCA_016908115.1",
                "taxid": 411567,
                "species_taxid": 411567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 612,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Peptoniphilus grossensis",
                "strain": "strain=ph5",
                "accession": "GCA_000311825.1",
                "taxid": 1465756,
                "species_taxid": 1465756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2092,
                "matched_fragments": 500,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus senegalensis",
                "strain": "strain=type strain: JC140",
                "accession": "GCA_000321025.1",
                "taxid": 1465757,
                "species_taxid": 1465757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6448,
                "matched_fragments": 461,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus phoceensis",
                "strain": "strain=SIT15",
                "accession": "GCA_001517665.2",
                "taxid": 1720298,
                "species_taxid": 1720298,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7818,
                "matched_fragments": 435,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus timonensis",
                "strain": "strain=JC401",
                "accession": "GCA_000312025.1",
                "taxid": 1268254,
                "species_taxid": 1268254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6625,
                "matched_fragments": 414,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus harei",
                "strain": "strain=NCTC13076",
                "accession": "GCA_900454685.1",
                "taxid": 54005,
                "species_taxid": 54005,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.6348,
                "matched_fragments": 420,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus harei",
                "strain": "strain=FDAARGOS_1136",
                "accession": "GCA_016726485.1",
                "taxid": 54005,
                "species_taxid": 54005,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.5454,
                "matched_fragments": 422,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        },
        "gtdb_result": [
            {
                "accession": "GCF_016908115.1",
                "gtdb_species": "s__Peptoniphilus_A gorbachii",
                "ani": 100.0,
                "matched_fragments": 612,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.70",
                "min_intra_species_ani": "96.17",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000311825.1",
                "gtdb_species": "s__Peptoniphilus_A grossensis",
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                "matched_fragments": 500,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.39",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000321025.1",
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                "matched_fragments": 461,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_012976305.1",
                "gtdb_species": "s__Peptoniphilus_A faecalis",
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                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
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                "mean_intra_species_ani": "98.47",
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                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001517665.2",
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                "matched_fragments": 437,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000312025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 96.7724,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900454685.1",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.228,
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        "doubling_h": null,
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        "optimum_tmp": 37.0,
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        "gc_content": 31.795,
        "coding_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 0.333,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Peptoniphilus",
        "gorbachii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}