{
    "type": "genome",
    "identifier": "GCF_016908555.1",
    "organism": "Alkaliphilus hydrothermalis",
    "title": "Alkaliphilus hydrothermalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016908555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17619974",
        "wgs_master": "JAFBEE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1482730",
        "species_taxid": "1482730",
        "organism_name": "Alkaliphilus hydrothermalis",
        "infraspecific_name": "strain=DSM 25890",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/19",
        "asm_name": "ASM1690855v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_016908555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/908/555/GCF_016908555.1_ASM1690855v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3075942",
        "genome_size_ungapped": "3075942",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "54",
        "contig_count": "54",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016908555.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3025",
        "protein_coding_gene_count": "2907",
        "non_coding_gene_count": "96",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-19",
    "dateModified": "2021-02-19",
    "datePublished": "2021-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkaliphilus hydrothermalis"
        ],
        "sample_taxid": [
            "1482730"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.865 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3075942",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "343446",
        "N50 (bp)": "118688",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.4",
        "Number of CDSs": "2929",
        "Average Protein Length": "294.6",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "80",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alkaliphilus hydrothermalis",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_000621485.1",
                "taxid": 114628,
                "species_taxid": 114628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2122,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkaliphilus serpentinus",
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                "taxid": 1482731,
                "species_taxid": 1482731,
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                "matched_fragments": 96,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronincola peptidivorans",
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                "accession": "GCA_900111615.1",
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                "species_taxid": 426128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5258,
                "matched_fragments": 64,
                "total_fragments": 998,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium formicaceticum",
                "strain": "strain=ATCC 27076",
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                "taxid": 1497,
                "species_taxid": 1497,
                "relation_to_type": "type",
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            {
                "organism_name": "Alkaliphilus peptidifermentans",
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                "accession": "GCA_900101495.1",
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                "species_taxid": 426129,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_002080475.1",
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                "ani": 76.5041,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerovirgula multivorans",
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                "taxid": 312168,
                "species_taxid": 312168,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3551,
                "matched_fragments": 84,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crassaminicella profunda",
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                "accession": "GCA_019884785.1",
                "taxid": 1286698,
                "species_taxid": 1286698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2412,
                "matched_fragments": 52,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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        "gtdb_result": [
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                "accession": "GCF_016908555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000621485.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    "_genome_taxon": [
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        "hydrothermalis"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}