{ "type": "genome", "identifier": "GCF_016908655.1", "organism": "Streptococcus saliviloxodontae", "title": "Streptococcus saliviloxodontae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016908655.1", "bioproject": "PRJNA224116", "biosample": "SAMN17620053", "wgs_master": "JAFBEI000000000.1", "refseq_category": "reference genome", "taxid": "1349416", "species_taxid": "1349416", "organism_name": "Streptococcus saliviloxodontae", "infraspecific_name": "strain=DSM 27513", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690865v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016908655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/908/655/GCF_016908655.1_ASM1690865v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2051957", "genome_size_ungapped": "2051957", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016908655.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1963", "protein_coding_gene_count": "1862", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus saliviloxodontae" ], "sample_taxid": [ "1349416" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.582 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2051957", "Number of Sequences": "75", "Longest Sequences (bp)": "95603", "N50 (bp)": "45772", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.8", "Number of CDSs": "1874", "Average Protein Length": "309.7", "Coding Ratio (%)": "84.8", "Number of rRNAs": "2", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus saliviloxodontae", "strain": "strain=DSM 27513", "accession": "GCA_016908655.1", "taxid": 1349416, 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"suspected-type", "validated": true, "ani": 79.6896, "matched_fragments": 176, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus agalactiae", "strain": "strain=NCTC8181", "accession": "GCA_900458965.1", "taxid": 1311, "species_taxid": 1311, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6364, "matched_fragments": 130, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=JCM 5707", "accession": "GCA_019972895.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6308, "matched_fragments": 180, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 79.5679, "matched_fragments": 94, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus agalactiae", "strain": "strain=ATCC 13813", "accession": "GCA_000186445.1", "taxid": 1311, "species_taxid": 1311, "relation_to_type": "type", "validated": true, "ani": 79.5676, "matched_fragments": 128, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=FDAARGOS_1019", "accession": "GCA_016127275.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.4593, "matched_fragments": 157, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ovis", "strain": "strain=DSM 16829", "accession": "GCA_000380125.1", "taxid": 82806, "species_taxid": 82806, "relation_to_type": "type", "validated": true, "ani": 79.444, "matched_fragments": 102, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1018", "accession": "GCA_016403165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 79.4423, "matched_fragments": 154, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.4275, "matched_fragments": 159, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.2409, "matched_fragments": 164, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 79.2195, "matched_fragments": 80, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 79.1814, "matched_fragments": 160, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 79.1565, "matched_fragments": 160, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 79.1044, "matched_fragments": 193, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1039, "matched_fragments": 93, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus didelphis", "strain": "strain=DSM 15616", "accession": "GCA_000380005.1", "taxid": 102886, "species_taxid": 102886, "relation_to_type": "type", "validated": true, "ani": 79.0856, "matched_fragments": 86, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 79.062, "matched_fragments": 107, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus subsp. gallolyticus", "strain": "strain=DSM 16831", "accession": "GCA_002000985.1", "taxid": 53354, "species_taxid": 315405, "relation_to_type": "type", "validated": true, "ani": 78.9898, "matched_fragments": 171, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus", "strain": "strain=NCTC13773", "accession": "GCA_900475715.1", "taxid": 315405, "species_taxid": 315405, "relation_to_type": "suspected-type", "validated": true, "ani": 78.975, "matched_fragments": 172, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 78.8085, "matched_fragments": 150, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halotolerans", "strain": "strain=HTS9", "accession": "GCA_001598035.1", "taxid": 1814128, "species_taxid": 1814128, "relation_to_type": "type", "validated": true, "ani": 78.795, "matched_fragments": 127, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porcinus", "strain": "strain=NCTC10999", "accession": "GCA_900475415.1", "taxid": 1340, "species_taxid": 1340, "relation_to_type": "type", "validated": true, "ani": 78.7831, "matched_fragments": 92, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, 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