{ "type": "genome", "identifier": "GCF_016908715.1", "organism": "Leuconostoc rapi", "title": "Leuconostoc rapi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016908715.1", "bioproject": "PRJNA224116", "biosample": "SAMN17619917", "wgs_master": "JAFBEK000000000.1", "refseq_category": "na", "taxid": "1406906", "species_taxid": "1406906", "organism_name": "Leuconostoc rapi", "infraspecific_name": "strain=DSM 27776", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690871v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016908715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/908/715/GCF_016908715.1_ASM1690871v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1924907", "genome_size_ungapped": "1924907", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016908715.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "1953", "protein_coding_gene_count": "1879", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Leuconostoc rapi" ], "sample_taxid": [ "1406906" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.545 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1924907", "Number of Sequences": "24", "Longest Sequences (bp)": "460873", "N50 (bp)": "241129", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.0", "Number of CDSs": "1895", "Average Protein Length": "297.9", "Coding Ratio (%)": "88.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leuconostoc rapi", "strain": "strain=DSM 27776", "accession": "GCA_016908715.1", "taxid": 1406906, "species_taxid": 1406906, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 625, "total_fragments": 627, "ani_threshold": 95, 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subsp. aenigmaticum", "strain": "strain=DSM 19375", "accession": "GCA_020089505.1", "taxid": 1607837, "species_taxid": 1244, "relation_to_type": "type", "validated": true, "ani": 80.0411, "matched_fragments": 345, "total_fragments": 627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc gelidum subsp. aenigmaticum", "strain": "strain=DSM 19375", "accession": "GCA_019655935.1", "taxid": 1607837, "species_taxid": 1244, "relation_to_type": "type", "validated": true, "ani": 80.019, "matched_fragments": 345, "total_fragments": 627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc gelidum subsp. gelidum", "strain": "strain=KCTC 3527", "accession": "GCA_000166715.2", "taxid": 1607839, "species_taxid": 1244, "relation_to_type": "type", "validated": true, "ani": 79.9336, "matched_fragments": 340, "total_fragments": 627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc holzapfelii", "strain": 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