{ "type": "genome", "identifier": "GCF_016908875.1", "organism": "Bacillus ectoiniformans", "title": "Bacillus ectoiniformans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016908875.1", "bioproject": "PRJNA224116", "biosample": "SAMN17620071", "wgs_master": "JAFBES000000000.1", "refseq_category": "reference genome", "taxid": "1494429", "species_taxid": "1494429", "organism_name": "Bacillus ectoiniformans", "infraspecific_name": "strain=DSM 28970", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690887v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016908875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/908/875/GCF_016908875.1_ASM1690887v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3531559", "genome_size_ungapped": "3531559", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016908875.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3499", "protein_coding_gene_count": "3402", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus ectoiniformans" ], "sample_taxid": [ "1494429" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Cytobacillus horneckiae", "strain": "strain=1P01SC", "accession": "GCA_002835735.1", "taxid": 549687, "species_taxid": 549687, "relation_to_type": "type", "validated": true, "ani": 77.384, "matched_fragments": 81, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Domibacillus enclensis", "strain": "strain=NIO-1016", "accession": "GCA_900156125.1", "taxid": 1017273, "species_taxid": 1017273, "relation_to_type": "type", "validated": true, "ani": 77.2121, "matched_fragments": 97, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Domibacillus enclensis", "strain": "strain=DSM 25145", "accession": "GCA_002237775.1", "taxid": 1017273, "species_taxid": 1017273, "relation_to_type": "type", "validated": true, "ani": 77.1851, "matched_fragments": 98, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus 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"accession": "GCA_018283675.1", "taxid": 2823519, "species_taxid": 2823519, "relation_to_type": "type", "validated": true, "ani": 77.0553, "matched_fragments": 59, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus sediminilitoris", "strain": "strain=DSL-17", "accession": "GCA_004801455.1", "taxid": 2567941, "species_taxid": 2567941, "relation_to_type": "type", "validated": true, "ani": 76.9452, "matched_fragments": 64, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus thuringiensis", "strain": "strain=ATCC 10792", "accession": "GCA_000161615.1", "taxid": 1428, "species_taxid": 1428, "relation_to_type": "suspected-type", "validated": true, "ani": 76.944, "matched_fragments": 56, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia sporothermodurans", "strain": "strain=DSM 10599", "accession": "GCA_016785185.1", 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"type", "validated": true, "ani": 76.7749, "matched_fragments": 66, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia circulans", "strain": "strain=NBRC 13626", "accession": "GCA_001591585.1", "taxid": 1397, "species_taxid": 1397, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7508, "matched_fragments": 67, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robertmurraya siralis", "strain": "strain=171544", "accession": "GCA_005502275.1", "taxid": 77777, "species_taxid": 77777, "relation_to_type": "type", "validated": true, "ani": 76.6484, "matched_fragments": 64, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus vitaminiphilus", "strain": "strain=CGMCC 1.8979", "accession": "GCA_003259935.1", "taxid": 581036, "species_taxid": 581036, "relation_to_type": "type", "validated": true, "ani": 76.5238, 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797375.1", "gtdb_species": "s__FJAT-46582 sp002797375", "ani": 78.027, "matched_fragments": 243, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__FJAT-46582", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.55", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009183655.1", "gtdb_species": "s__Pseudobacillus aerolatus", "ani": 77.8816, "matched_fragments": 231, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Pseudobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.176, "cell_length": 0.387, "doubling_h": -0.134, "growth_tmp": 30.0, "optimum_tmp": 33.64, "optimum_ph": 7.746, "genome_size": 4544138.117, "gc_content": 40.577, "coding_genes": 4334.002, "rRNA16S_genes": 9.859, "tRNA_genes": 88.223, "gram_stain": 0.993, "sporulation": 0.975, "motility": 0.841, "range_salinity": 0.6, "facultative_respiration": 0.16, "anaerobic_respiration": 0.011, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 0.928, "thermophilic_range_tmp": 0.053, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bacillus", "ectoiniformans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }