{ "type": "genome", "identifier": "GCF_016908995.1", "organism": "Enterococcus ureilyticus", "title": "Enterococcus ureilyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016908995.1", "bioproject": "PRJNA224116", "biosample": "SAMN17620026", "wgs_master": "JAFBEZ000000000.1", "refseq_category": "na", "taxid": "1131292", "species_taxid": "1131292", "organism_name": "Enterococcus ureilyticus", "infraspecific_name": "strain=DSM 102981", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/19", "asm_name": "ASM1690899v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_016908995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/908/995/GCF_016908995.1_ASM1690899v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3466269", "genome_size_ungapped": "3466269", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016908995.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3308", "protein_coding_gene_count": "3199", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-19", "dateModified": "2021-02-19", "datePublished": "2021-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus ureilyticus" ], "sample_taxid": [ "1131292" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000407165.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 83.7607, "matched_fragments": 759, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus ureasiticus", "strain": "strain=DSM 23328", "accession": "GCA_001730285.1", "taxid": 903984, "species_taxid": 903984, "relation_to_type": "type", "validated": true, "ani": 83.7432, "matched_fragments": 757, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000393995.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 83.6848, "matched_fragments": 757, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus silesiacus", "strain": "strain=DSM 22801", "accession": "GCA_001886225.1", "taxid": 332949, "species_taxid": 332949, "relation_to_type": "type", "validated": true, "ani": 83.6423, "matched_fragments": 766, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus crotali", "strain": "strain=ETRF1", "accession": "GCA_000633635.1", "taxid": 1453587, "species_taxid": 1453587, "relation_to_type": "type", "validated": true, "ani": 83.1553, "matched_fragments": 806, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus caccae", "strain": "strain=ATCC BAA-1240", "accession": "GCA_000407145.1", "taxid": 317735, "species_taxid": 317735, "relation_to_type": "type", "validated": true, "ani": 82.8479, "matched_fragments": 730, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=PartL-Efaecalis-RM8376", 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1303817, "relation_to_type": "type", "validated": true, "ani": 77.4764, "matched_fragments": 102, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001730315.1", "gtdb_species": "s__Enterococcus ureilyticus", "ani": 99.9825, "matched_fragments": 1129, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.29", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_001730295.1", "gtdb_species": "s__Enterococcus plantarum", "ani": 84.3624, "matched_fragments": 715, "total_fragments": 1135, "gtdb_taxonomy": 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