{
    "type": "genome",
    "identifier": "GCF_016909075.1",
    "organism": "Metabacillus iocasae",
    "title": "Metabacillus iocasae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016909075.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17620032",
        "wgs_master": "JAFBFC000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2291674",
        "species_taxid": "2291674",
        "organism_name": "Metabacillus iocasae",
        "infraspecific_name": "strain=DSM 104297",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/19",
        "asm_name": "ASM1690907v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_016909075.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/909/075/GCF_016909075.1_ASM1690907v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3961999",
        "genome_size_ungapped": "3961999",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016909075.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4000",
        "protein_coding_gene_count": "3886",
        "non_coding_gene_count": "89",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-19",
    "dateModified": "2021-02-19",
    "datePublished": "2021-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Metabacillus iocasae"
        ],
        "sample_taxid": [
            "2291674"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.119 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3961999",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "1048944",
        "N50 (bp)": "582189",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "3913",
        "Average Protein Length": "289.2",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Metabacillus iocasae",
                "strain": "strain=DSM 104297",
                "accession": "GCA_016909075.1",
                "taxid": 2291674,
                "species_taxid": 2291674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1311,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Priestia megaterium",
                "strain": "strain=NCTC10342",
                "accession": "GCA_900445485.1",
                "taxid": 1404,
                "species_taxid": 1404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4162,
                "matched_fragments": 280,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Priestia megaterium",
                "strain": "strain=ATCC 14581",
                "accession": "GCA_006094495.1",
                "taxid": 1404,
                "species_taxid": 1404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.399,
                "matched_fragments": 280,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Priestia megaterium",
                "strain": "strain=ATCC 14581",
                "accession": "GCA_000832985.1",
                "taxid": 1404,
                "species_taxid": 1404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3577,
                "matched_fragments": 280,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Priestia megaterium",
                "strain": "strain=NBRC 15308",
                "accession": "GCA_001591525.1",
                "taxid": 1404,
                "species_taxid": 1404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3368,
                "matched_fragments": 278,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Priestia aryabhattai",
                "strain": "strain=B8W22",
                "accession": "GCA_000956595.1",
                "taxid": 412384,
                "species_taxid": 412384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1764,
                "matched_fragments": 290,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Priestia abyssalis",
                "strain": "strain=DSM 25875",
                "accession": "GCA_002019595.1",
                "taxid": 1221450,
                "species_taxid": 1221450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4328,
                "matched_fragments": 207,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus cereus",
                "strain": "strain=NCTC2599",
                "accession": "GCA_900445355.1",
                "taxid": 1396,
                "species_taxid": 1396,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.3854,
                "matched_fragments": 130,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus cereus",
                "strain": "strain=ATCC 14579",
                "accession": "GCA_006094295.1",
                "taxid": 1396,
                "species_taxid": 1396,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.3608,
                "matched_fragments": 134,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus cereus",
                "strain": "strain=FSL M8-0473",
                "accession": "GCA_002014665.1",
                "taxid": 1396,
                "species_taxid": 1396,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.3568,
                "matched_fragments": 130,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus cereus",
                "strain": "strain=ATCC 14579",
                "accession": "GCA_000007825.1",
                "taxid": 1396,
                "species_taxid": 1396,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.355,
                "matched_fragments": 129,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus anthracis",
                "strain": "strain=Vollum",
                "accession": "GCA_022221345.1",
                "taxid": 1392,
                "species_taxid": 1392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2837,
                "matched_fragments": 129,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus mycoides",
                "strain": "strain=DSM 2048",
                "accession": "GCA_022630575.1",
                "taxid": 1405,
                "species_taxid": 1405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2774,
                "matched_fragments": 122,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ectobacillus antri",
                "strain": "strain=SYSU K30001",
                "accession": "GCA_003852715.1",
                "taxid": 2486280,
                "species_taxid": 2486280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2767,
                "matched_fragments": 83,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus sanguinis",
                "strain": "strain=BML-BC004",
                "accession": "GCA_018332475.1",
                "taxid": 2817476,
                "species_taxid": 2817476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2023,
                "matched_fragments": 138,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutcliffiella cohnii",
                "strain": "strain=DSM 6307",
                "accession": "GCA_002250055.1",
                "taxid": 33932,
                "species_taxid": 33932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1606,
                "matched_fragments": 126,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus sedimentimangrovi",
                "strain": "strain=FJAT-2464",
                "accession": "GCA_010614825.1",
                "taxid": 2699460,
                "species_taxid": 2699460,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0178,
                "matched_fragments": 78,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus suaedaesalsae",
                "strain": "strain=RD4P76",
                "accession": "GCA_016890225.1",
                "taxid": 2810349,
                "species_taxid": 2810349,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9989,
                "matched_fragments": 96,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gottfriedia endophyticus",
                "strain": "strain=RG28",
                "accession": "GCA_017814275.1",
                "taxid": 2820819,
                "species_taxid": 2820819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6741,
                "matched_fragments": 107,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquibacillus sediminis",
                "strain": "strain=BH258",
                "accession": "GCA_005870085.1",
                "taxid": 2574734,
                "species_taxid": 2574734,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4472,
                "matched_fragments": 66,
                "total_fragments": 1311,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016909075.1",
                "gtdb_species": "s__Priestia iocasae",
                "ani": 100.0,
                "matched_fragments": 1311,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003184905.1",
                "gtdb_species": "s__Priestia sp003184905",
                "ani": 82.6671,
                "matched_fragments": 919,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008180335.1",
                "gtdb_species": "s__Priestia megaterium_B",
                "ani": 78.5678,
                "matched_fragments": 323,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002265635.1",
                "gtdb_species": "s__Priestia aryabhattai_A",
                "ani": 78.4214,
                "matched_fragments": 295,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000832985.1",
                "gtdb_species": "s__Priestia megaterium",
                "ani": 78.3624,
                "matched_fragments": 279,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 95.5311,
                "mean_intra_species_ani": "96.82",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 151,
                "status": "-"
            },
            {
                "accession": "GCF_009497655.1",
                "gtdb_species": "s__Priestia megaterium_A",
                "ani": 78.2832,
                "matched_fragments": 279,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 96.022,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "96.36",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_001591565.1",
                "gtdb_species": "s__Priestia flexa",
                "ani": 78.2066,
                "matched_fragments": 270,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_000956595.1",
                "gtdb_species": "s__Priestia aryabhattai",
                "ani": 78.1764,
                "matched_fragments": 290,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia",
                "ani_circumscription_radius": 96.022,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "96.58",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_001274935.1",
                "gtdb_species": "s__Bacillus_AG koreensis",
                "ani": 77.6782,
                "matched_fragments": 219,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Bacillus_AG",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002019595.1",
                "gtdb_species": "s__Bacillus_BA abyssalis",
                "ani": 77.4328,
                "matched_fragments": 207,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Bacillus_BA",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000383235.1",
                "gtdb_species": "s__Bacillus_A sp000383235",
                "ani": 77.0641,
                "matched_fragments": 124,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900240995.1",
                "gtdb_species": "s__OESV01 sp900240995",
                "ani": 76.6393,
                "matched_fragments": 92,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_C;f__Bacillaceae_J;g__OESV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001591645.1",
                "gtdb_species": "s__Robertmurraya korlensis",
                "ani": 76.5294,
                "matched_fragments": 99,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Robertmurraya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005870085.1",
                "gtdb_species": "s__BH258 sp005870085",
                "ani": 76.3173,
                "matched_fragments": 65,
                "total_fragments": 1311,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__BH258",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Metabacillus",
        "iocasae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}