{
    "type": "genome",
    "identifier": "GCF_016909185.1",
    "organism": "Siminovitchia thermophila",
    "title": "Siminovitchia thermophila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016909185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17620044",
        "wgs_master": "JAFBFH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1245522",
        "species_taxid": "1245522",
        "organism_name": "Siminovitchia thermophila",
        "infraspecific_name": "strain=DSM 105453",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/19",
        "asm_name": "ASM1690918v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_016909185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/909/185/GCF_016909185.1_ASM1690918v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4735876",
        "genome_size_ungapped": "4735876",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "86",
        "contig_count": "86",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016909185.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "4585",
        "protein_coding_gene_count": "4415",
        "non_coding_gene_count": "80",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-19",
    "dateModified": "2021-02-19",
    "datePublished": "2021-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Siminovitchia thermophila"
        ],
        "sample_taxid": [
            "1245522"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.347 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4735876",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "350564",
        "N50 (bp)": "118442",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.8",
        "Number of CDSs": "4580",
        "Average Protein Length": "278.1",
        "Coding Ratio (%)": "80.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Siminovitchia thermophila",
                "strain": "strain=DSM 105453",
                "accession": "GCA_016909185.1",
                "taxid": 1245522,
                "species_taxid": 1245522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1527,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Siminovitchia fordii",
                "strain": "strain=DSM 16014",
                "accession": "GCA_000374565.1",
                "taxid": 254759,
                "species_taxid": 254759,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7116,
                "matched_fragments": 256,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia fortis",
                "strain": "strain=DSM 16012",
                "accession": "GCA_003605365.2",
                "taxid": 254758,
                "species_taxid": 254758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.807,
                "matched_fragments": 244,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia acidinfaciens",
                "strain": "strain=3-2-2",
                "accession": "GCA_003605385.2",
                "taxid": 2321395,
                "species_taxid": 2321395,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.102,
                "matched_fragments": 228,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia citrisecundus",
                "strain": "strain=FJAT-49732",
                "accession": "GCA_018343695.1",
                "taxid": 2833583,
                "species_taxid": 2833583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8325,
                "matched_fragments": 82,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia wuyishanensis",
                "strain": "strain=CGMCC 1.12709",
                "accession": "GCA_022900255.1",
                "taxid": 1347903,
                "species_taxid": 1347903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4847,
                "matched_fragments": 89,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia panacisoli",
                "strain": "strain=KACC 17503",
                "accession": "GCA_024626525.1",
                "taxid": 1255251,
                "species_taxid": 1255251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2861,
                "matched_fragments": 90,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8892,
                "matched_fragments": 66,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Margalitia shackletonii",
                "strain": "strain=LMG 18435",
                "accession": "GCA_001420715.1",
                "taxid": 157838,
                "species_taxid": 157838,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7352,
                "matched_fragments": 56,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus salipaludis",
                "strain": "strain=WN066",
                "accession": "GCA_004358205.1",
                "taxid": 2547811,
                "species_taxid": 2547811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6978,
                "matched_fragments": 51,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus badius",
                "strain": "strain=NBRC 15713",
                "accession": "GCA_001591605.1",
                "taxid": 1455,
                "species_taxid": 1455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6178,
                "matched_fragments": 57,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016909185.1",
                "gtdb_species": "s__Siminovitchia thermophila",
                "ani": 100.0,
                "matched_fragments": 1527,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "99.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000374565.1",
                "gtdb_species": "s__Siminovitchia fordii",
                "ani": 78.6949,
                "matched_fragments": 257,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_009928435.1",
                "gtdb_species": "s__Siminovitchia sp009928435",
                "ani": 77.8874,
                "matched_fragments": 204,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003605365.2",
                "gtdb_species": "s__Siminovitchia fortis",
                "ani": 77.7938,
                "matched_fragments": 245,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_008764245.1",
                "gtdb_species": "s__Lederbergia ruris",
                "ani": 77.495,
                "matched_fragments": 74,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Lederbergia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018343695.1",
                "gtdb_species": "s__FJAT-49711 sp018343695",
                "ani": 76.8325,
                "matched_fragments": 82,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__FJAT-49711",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018343515.1",
                "gtdb_species": "s__Bacillus_AH sp018343515",
                "ani": 76.7065,
                "matched_fragments": 99,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Bacillus_AH",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017303275.1",
                "gtdb_species": "s__Cytobacillus sp017303275",
                "ani": 75.9071,
                "matched_fragments": 53,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001420595.1",
                "gtdb_species": "s__Cytobacillus solani",
                "ani": 75.8893,
                "matched_fragments": 66,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001591605.1",
                "gtdb_species": "s__Pseudobacillus badius",
                "ani": 75.6178,
                "matched_fragments": 57,
                "total_fragments": 1533,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Pseudobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "97.77",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Siminovitchia",
        "thermophila"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}