{ "type": "genome", "identifier": "GCF_016918545.1", "organism": "Desulfobulbus alkaliphilus", "title": "Desulfobulbus alkaliphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Harvard University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016918545.1", "bioproject": "PRJNA224116", "biosample": "SAMN17615045", "wgs_master": "JAFFQC000000000.1", "refseq_category": "reference genome", "taxid": "869814", "species_taxid": "869814", "organism_name": "Desulfobulbus alkaliphilus", "infraspecific_name": "strain=DSM 24258", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/22", "asm_name": "ASM1691854v1", "asm_submitter": "Harvard University", "gbrs_paired_asm": "GCA_016918545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/918/545/GCF_016918545.1_ASM1691854v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4201268", "genome_size_ungapped": "4201268", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "479", "contig_count": "479", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016918545.1-RS_2024_08_27", "annotation_date": "2024-08-27", "total_gene_count": "3792", "protein_coding_gene_count": "3575", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-22", "dateModified": "2021-02-22", "datePublished": "2021-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobulbus alkaliphilus" ], "sample_taxid": [ "869814" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Altai, Kulunda Step" ], "sample_host_location_id": [], "data_size": "1.205 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.83, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4201268", "Number of Sequences": "479", "Longest Sequences (bp)": "230262", "N50 (bp)": "107120", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.7", "Number of CDSs": "3443", "Average Protein Length": "322.5", "Coding Ratio (%)": "79.3", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfobulbus alkaliphilus", "strain": "strain=DSM 24258", "accession": "GCA_016918545.1", "taxid": 869814, "species_taxid": 869814, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1291, "total_fragments": 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"organism_name": "Desulfobulbus rhabdoformis", "strain": "strain=DSM 8777", "accession": "GCA_016919065.1", "taxid": 34032, "species_taxid": 34032, "relation_to_type": "type", "validated": true, "ani": 76.4516, "matched_fragments": 127, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus oralis", "strain": "strain=HOT041/ORNL", "accession": "GCA_002952055.1", "taxid": 1986146, "species_taxid": 1986146, "relation_to_type": "type", "validated": true, "ani": 76.4403, "matched_fragments": 71, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 3.83, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016918545.1", "gtdb_species": "s__Desulfobulbus alkaliphilus", "ani": 100.0, "matched_fragments": 1291, "total_fragments": 1293, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Desulfobulbus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_007121995.1", "gtdb_species": "s__Desulfobulbus sp007121995", "ani": 84.0715, "matched_fragments": 365, "total_fragments": 1293, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Desulfobulbus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000621145.1", "gtdb_species": "s__Desulfobulbus elongatus", "ani": 77.5385, "matched_fragments": 258, "total_fragments": 1293, "gtdb_taxonomy": 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