{ "type": "genome", "identifier": "GCF_016918785.1", "organism": "Leptospira ainazelensis", "title": "Leptospira ainazelensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRS-Institut Armand-Frappier", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016918785.1", "bioproject": "PRJNA224116", "biosample": "SAMN17767091", "wgs_master": "JAFFPT000000000.1", "refseq_category": "reference genome", "taxid": "2810034", "species_taxid": "2810034", "organism_name": "Leptospira ainazelensis", "infraspecific_name": "strain=201903071", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/22", "asm_name": "ASM1691878v1", "asm_submitter": "INRS-Institut Armand-Frappier", "gbrs_paired_asm": "GCA_016918785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/918/785/GCF_016918785.1_ASM1691878v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4864687", "genome_size_ungapped": "4864687", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "94", "contig_count": "94", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016918785.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4467", "protein_coding_gene_count": "4343", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-22", "dateModified": "2021-02-22", "datePublished": "2021-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Leptospira ainazelensis" ], "sample_taxid": [ "2810034" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Algeria: Ain Azel" ], "sample_host_location_id": [], "data_size": "1.361 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4864687", "Number of Sequences": "94", "Longest Sequences (bp)": "560431", "N50 (bp)": "199138", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.6", "Number of CDSs": "4317", "Average Protein Length": "319.3", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptospira ainazelensis", "strain": "strain=201903071", "accession": "GCA_016918785.1", "taxid": 2810034, "species_taxid": 2810034, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1579, 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"status": "below_threshold" }, { "organism_name": "Leptospira kmetyi", "strain": "strain=Bejo-Iso9", "accession": "GCA_000243735.3", "taxid": 408139, "species_taxid": 408139, "relation_to_type": "type", "validated": true, "ani": 81.4369, "matched_fragments": 974, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira yasudae", "strain": "strain=F1", "accession": "GCA_003545925.1", "taxid": 2202201, "species_taxid": 2202201, "relation_to_type": "type", "validated": true, "ani": 80.8456, "matched_fragments": 944, "total_fragments": 1581, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016918785.1", "gtdb_species": "s__Leptospira sp016918785", "ani": 100.0, "matched_fragments": 1579, "total_fragments": 1581, "gtdb_taxonomy": 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"d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira", "ani_circumscription_radius": 95.7414, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003545875.1", "gtdb_species": "s__Leptospira stimsonii_A", "ani": 84.5601, "matched_fragments": 1199, "total_fragments": 1581, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira", "ani_circumscription_radius": 95.7414, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.8, "cell_length": 0.954, "doubling_h": 1.009, "growth_tmp": 29.846, "optimum_tmp": 30.329, "optimum_ph": 7.4, "genome_size": 4295423.544, "gc_content": 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