{ "type": "genome", "identifier": "GCF_016919065.1", "organism": "Desulfobulbus rhabdoformis", "title": "Desulfobulbus rhabdoformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Harvard University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016919065.1", "bioproject": "PRJNA224116", "biosample": "SAMN17615047", "wgs_master": "JAFFQA000000000.1", "refseq_category": "reference genome", "taxid": "34032", "species_taxid": "34032", "organism_name": "Desulfobulbus rhabdoformis", "infraspecific_name": "strain=DSM 8777", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/22", "asm_name": "ASM1691906v1", "asm_submitter": "Harvard University", "gbrs_paired_asm": "GCA_016919065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/919/065/GCF_016919065.1_ASM1691906v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5266585", "genome_size_ungapped": "5266585", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "214", "contig_count": "214", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016919065.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4592", "protein_coding_gene_count": "4442", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-22", "dateModified": "2021-02-22", "datePublished": "2021-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobulbus rhabdoformis" ], "sample_taxid": [ "34032" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway: North Sea" ], "sample_host_location_id": [], "data_size": "1.515 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5266585", "Number of Sequences": "214", "Longest Sequences (bp)": "243069", "N50 (bp)": "88709", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.0", "Number of CDSs": "4432", "Average Protein Length": "329.8", "Coding Ratio (%)": "83.3", "Number of rRNAs": "2", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfobulbus rhabdoformis", "strain": "strain=DSM 8777", "accession": "GCA_016919065.1", "taxid": 34032, "species_taxid": 34032, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1672, "total_fragments": 1676, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Desulfobulbus oligotrophicus", "strain": "strain=Prop6", "accession": "GCA_016446285.1", "taxid": 1909699, "species_taxid": 1909699, "relation_to_type": "type", "validated": true, "ani": 79.9802, "matched_fragments": 133, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfogranum mediterraneum", "strain": "strain=DSM 13871", "accession": "GCA_000429965.1", "taxid": 160661, "species_taxid": 160661, "relation_to_type": "type", "validated": true, "ani": 77.1575, "matched_fragments": 141, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus elongatus", "strain": "strain=DSM 2908", "accession": "GCA_000621145.1", "taxid": 53332, "species_taxid": 53332, "relation_to_type": "type", "validated": true, "ani": 77.0387, "matched_fragments": 198, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfogranum japonicum", "strain": "strain=DSM 18378", "accession": "GCA_000429945.1", "taxid": 231447, "species_taxid": 231447, "relation_to_type": "type", "validated": true, "ani": 76.9759, "matched_fragments": 96, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfogranum marinum", "strain": "strain=DSM 2058", "accession": "GCA_016918565.1", "taxid": 453220, "species_taxid": 453220, "relation_to_type": "type", "validated": true, "ani": 76.801, "matched_fragments": 85, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus alkaliphilus", "strain": "strain=DSM 24258", "accession": "GCA_016918545.1", "taxid": 869814, "species_taxid": 869814, "relation_to_type": "type", "validated": true, "ani": 76.4692, "matched_fragments": 133, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfopila aestuarii", "strain": 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