{ "type": "genome", "identifier": "GCF_016919165.1", "organism": "Leptospira chreensis", "title": "Leptospira chreensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRS-Institut Armand-Frappier", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016919165.1", "bioproject": "PRJNA224116", "biosample": "SAMN17767092", "wgs_master": "JAFFPS000000000.1", "refseq_category": "reference genome", "taxid": "2810035", "species_taxid": "2810035", "organism_name": "Leptospira chreensis", "infraspecific_name": "strain=201903075", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/22", "asm_name": "ASM1691916v1", "asm_submitter": "INRS-Institut Armand-Frappier", "gbrs_paired_asm": "GCA_016919165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/919/165/GCF_016919165.1_ASM1691916v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4489308", "genome_size_ungapped": "4489308", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "80", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016919165.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4190", "protein_coding_gene_count": "4102", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-22", "dateModified": "2021-02-22", "datePublished": "2021-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Leptospira chreensis" ], "sample_taxid": [ "2810035" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Algeria: Chrea" ], "sample_host_location_id": [], "data_size": "1.271 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4489308", "Number of Sequences": "80", "Longest Sequences (bp)": "419427", "N50 (bp)": "122992", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.8", "Number of CDSs": "4110", "Average Protein Length": "332.2", "Coding Ratio (%)": "91.3", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptospira chreensis", "strain": "strain=201903075", "accession": "GCA_016919165.1", "taxid": 2810035, "species_taxid": 2810035, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1399, 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"below_threshold" }, { "organism_name": "Leptospira terpstrae", "strain": "strain=LT 11-33", "accession": "GCA_000332495.2", "taxid": 293075, "species_taxid": 293075, "relation_to_type": "type", "validated": true, "ani": 85.1145, "matched_fragments": 1107, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira brenneri", "strain": "strain=JW2-C-A2", "accession": "GCA_002812125.1", "taxid": 2023182, "species_taxid": 2023182, "relation_to_type": "type", "validated": true, "ani": 84.1343, "matched_fragments": 1047, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira harrisiae", "strain": "strain=FH2-B-A1", "accession": "GCA_002811945.1", "taxid": 2023189, "species_taxid": 2023189, "relation_to_type": "type", "validated": true, "ani": 83.7625, "matched_fragments": 1004, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira 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"gc_content": 39.557, "coding_genes": 3721.42, "rRNA16S_genes": 2.0, "tRNA_genes": 36.694, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.1, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.9 }, "_genome_taxon": [ "Leptospira", "chreensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }