{ "type": "genome", "identifier": "GCF_016925535.1", "organism": "Natronoglycomyces albus", "title": "Natronoglycomyces albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Leibniz Institute DSMZ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016925535.1", "bioproject": "PRJNA224116", "biosample": "SAMN17761733", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2811108", "species_taxid": "2811108", "organism_name": "Natronoglycomyces albus", "infraspecific_name": "strain=DSM 106290", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/24", "asm_name": "ASM1692553v1", "asm_submitter": "Leibniz Institute DSMZ", "gbrs_paired_asm": "GCA_016925535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/925/535/GCF_016925535.1_ASM1692553v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4012379", "genome_size_ungapped": "4012379", "gc_percent": "61.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016925535.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3443", "protein_coding_gene_count": "3339", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-24", "dateModified": "2021-02-24", "datePublished": "2021-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Natronoglycomyces albus" ], "sample_taxid": [ "2811108" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia:Altai" ], "sample_host_location_id": [], "data_size": "1.134 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4012379", "Number of Sequences": "3", "Longest Sequences (bp)": "3937850", "N50 (bp)": "3937850", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3451", "Average Protein Length": "317.6", "Coding Ratio (%)": "82.0", "Number of rRNAs": "9", "Number of tRNAs": "48", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natronoglycomyces albus", "strain": "strain=DSM 106290", "accession": "GCA_016925535.1", "taxid": 2811108, "species_taxid": 2811108, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1335, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Glycomyces salinus", "strain": "strain=YIM 93776", "accession": "GCA_016428645.1", "taxid": 980294, "species_taxid": 980294, "relation_to_type": "type", "validated": true, "ani": 77.464, "matched_fragments": 222, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces buryatensis", "strain": "strain=18", "accession": "GCA_004912275.1", "taxid": 2570927, "species_taxid": 2570927, "relation_to_type": "type", "validated": true, "ani": 77.4277, "matched_fragments": 198, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces xiaoerkulensis", "strain": "strain=TRM 41368", "accession": "GCA_002798405.1", "taxid": 2038139, "species_taxid": 2038139, "relation_to_type": "type", "validated": true, "ani": 77.3537, "matched_fragments": 211, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces tenuis", "strain": "strain=NRRL B-16895", "accession": "GCA_000715885.1", "taxid": 58116, "species_taxid": 58116, "relation_to_type": "type", "validated": true, "ani": 77.3413, "matched_fragments": 233, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces arizonensis", "strain": "strain=DSM 44726", "accession": "GCA_000482705.1", "taxid": 256035, "species_taxid": 256035, "relation_to_type": "type", "validated": true, "ani": 77.2369, "matched_fragments": 234, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces dulcitolivorans", "strain": "strain=SJ-25", "accession": "GCA_003265355.1", "taxid": 2200759, "species_taxid": 2200759, "relation_to_type": "type", "validated": true, "ani": 77.1952, "matched_fragments": 195, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces tenuis", "strain": "strain=DSM 44171", "accession": "GCA_000427885.1", "taxid": 58116, "species_taxid": 58116, "relation_to_type": "type", "validated": true, "ani": 77.1523, "matched_fragments": 222, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces albidus", "strain": "strain=NEAU-7082", "accession": "GCA_009451885.1", "taxid": 2656774, "species_taxid": 2656774, "relation_to_type": "type", "validated": true, "ani": 76.829, "matched_fragments": 210, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stackebrandtia albiflava", "strain": "strain=DSM 45044", "accession": "GCA_007994225.1", "taxid": 406432, "species_taxid": 406432, "relation_to_type": "type", "validated": true, "ani": 76.7264, "matched_fragments": 157, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora subtropica", "strain": "strain=CGMCC 4.7206", "accession": "GCA_014646075.1", "taxid": 1530170, "species_taxid": 1530170, "relation_to_type": "type", "validated": true, "ani": 75.796, "matched_fragments": 77, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia stercoris", "strain": "strain=NEAU-LL90", "accession": "GCA_003696265.1", "taxid": 2483361, "species_taxid": 2483361, "relation_to_type": "type", "validated": true, "ani": 75.7036, "matched_fragments": 75, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia lijiangensis", "strain": "strain=NBRC 108240", "accession": "GCA_001613045.1", "taxid": 299618, "species_taxid": 299618, "relation_to_type": "type", "validated": true, "ani": 75.6558, "matched_fragments": 86, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola xinjiangensis", "strain": "strain=CGMCC 4.4663", "accession": "GCA_001921215.1", "taxid": 485602, "species_taxid": 485602, "relation_to_type": "type", "validated": true, "ani": 75.5919, "matched_fragments": 95, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016925535.1", "gtdb_species": "s__Natronoglycomyces albus", "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Natronoglycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016428645.1", "gtdb_species": "s__Glycomyces sp016428645", "ani": 77.464, "matched_fragments": 222, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004912275.1", "gtdb_species": "s__Glycomyces buryatensis", "ani": 77.4151, "matched_fragments": 199, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002798405.1", "gtdb_species": "s__Glycomyces xiaoerkulensis", "ani": 77.3392, "matched_fragments": 210, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000482705.1", "gtdb_species": "s__Glycomyces arizonensis", "ani": 77.2601, "matched_fragments": 232, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003265355.1", "gtdb_species": "s__Glycomyces dulcitolivorans", "ani": 77.1807, "matched_fragments": 196, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000427885.1", "gtdb_species": "s__Glycomyces tenuis", "ani": 77.1523, "matched_fragments": 222, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003933745.1", "gtdb_species": "s__Glycomyces terrestris", "ani": 77.1328, "matched_fragments": 207, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009451885.1", "gtdb_species": "s__Glycomyces albidus", "ani": 76.8173, "matched_fragments": 211, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007994225.1", "gtdb_species": "s__Stackebrandtia albiflava", "ani": 76.6382, "matched_fragments": 157, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Stackebrandtia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011947195.1", "gtdb_species": "s__Planosporangium thailandense", "ani": 76.104, "matched_fragments": 99, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Planosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362315.1", "gtdb_species": "s__Mycobacterium sp004362315", "ani": 75.894, "matched_fragments": 53, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003696265.1", "gtdb_species": "s__Nocardia stercoris", "ani": 75.7036, "matched_fragments": 75, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001613045.1", "gtdb_species": "s__Nocardia lijiangensis", "ani": 75.6414, "matched_fragments": 87, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Natronoglycomyces", "albus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }