{ "type": "genome", "identifier": "GCF_016925555.1", "organism": "Mycoplasma tauri", "title": "Mycoplasma tauri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016925555.1", "bioproject": "PRJNA224116", "biosample": "SAMN17840527", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "547987", "species_taxid": "547987", "organism_name": "Mycoplasma tauri", "infraspecific_name": "strain=Zaradi2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/24", "asm_name": "ASM1692555v1", "asm_submitter": "Institute of Microbiology", "gbrs_paired_asm": "GCA_016925555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/925/555/GCF_016925555.1_ASM1692555v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "764150", "genome_size_ungapped": "764150", "gc_percent": "27.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016925555.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "666", "protein_coding_gene_count": "619", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-24", "dateModified": "2021-02-24", "datePublished": "2021-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycoplasma tauri" ], "sample_taxid": [ "547987" ], "sample_host_organism": [ "Bos taurus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria: Upper Austria" ], "sample_host_location_id": [], "data_size": "0.206 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "764150", "Number of Sequences": "1", "Longest Sequences (bp)": "764150", "N50 (bp)": "764150", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "26.9", "Number of CDSs": "1195", "Average Protein Length": "148.4", "Coding Ratio (%)": "69.6", "Number of rRNAs": "4", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycoplasma tauri", "strain": "strain=Zaradi2", "accession": "GCA_016925555.1", "taxid": 547987, "species_taxid": 547987, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 254, "total_fragments": 254, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycoplasmopsis primatum", "strain": "strain=ATCC 25948", "accession": "GCA_000702785.1", "taxid": 55604, "species_taxid": 55604, "relation_to_type": "type", "validated": true, "ani": 79.4014, "matched_fragments": 82, "total_fragments": 254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis felifaucium", "strain": "strain=ATCC 43428", "accession": "GCA_000687775.1", "taxid": 35768, "species_taxid": 35768, "relation_to_type": "type", "validated": true, "ani": 79.0166, "matched_fragments": 56, "total_fragments": 254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis maculosa", "strain": "strain=NCTC10168", "accession": "GCA_900660665.1", "taxid": 114885, "species_taxid": 114885, "relation_to_type": "type", "validated": true, "ani": 78.4084, "matched_fragments": 67, "total_fragments": 254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis agalactiae", "strain": "strain=PG2", "accession": "GCA_000063605.1", "taxid": 2110, "species_taxid": 2110, "relation_to_type": "type", "validated": true, "ani": 78.2974, "matched_fragments": 76, "total_fragments": 254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis bovis", "strain": "strain=PG45", "accession": "GCA_000183385.1", "taxid": 28903, "species_taxid": 28903, "relation_to_type": "type", "validated": true, "ani": 78.2709, "matched_fragments": 81, "total_fragments": 254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis lipofaciens", "strain": "strain=ATCC 35015", "accession": "GCA_000686585.1", "taxid": 114884, "species_taxid": 114884, "relation_to_type": "type", "validated": true, "ani": 78.171, "matched_fragments": 51, "total_fragments": 254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis caviae", "strain": "strain=G122", "accession": "GCA_024498215.1", "taxid": 55603, "species_taxid": 55603, "relation_to_type": "type", "validated": true, "ani": 78.1021, "matched_fragments": 50, "total_fragments": 254, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016925555.1", "gtdb_species": "s__Mycoplasmopsis sp016925555", "ani": 100.0, "matched_fragments": 254, "total_fragments": 254, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000702785.1", "gtdb_species": "s__Mycoplasmopsis primatum", "ani": 79.4014, "matched_fragments": 82, "total_fragments": 254, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "97.48", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.85", "num_clustered_genomes": 193, "status": "-" }, { "accession": "GCF_000266865.1", "gtdb_species": "s__Mycoplasmopsis agalactiae_A", "ani": 78.1899, "matched_fragments": 73, "total_fragments": 254, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Mycoplasmopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005061465.1", "gtdb_species": "s__Mycoplasmopsis bovis_A", "ani": 78.1117, "matched_fragments": 88, "total_fragments": 254, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mycoplasma", "tauri" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }