{ "type": "genome", "identifier": "GCF_016937515.1", "organism": "Cohnella algarum", "title": "Cohnella algarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016937515.1", "bioproject": "PRJNA224116", "biosample": "SAMN17980853", "wgs_master": "JAFHKM000000000.1", "refseq_category": "reference genome", "taxid": "2044859", "species_taxid": "2044859", "organism_name": "Cohnella algarum", "infraspecific_name": "strain=Pch-40", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/24", "asm_name": "ASM1693751v1", "asm_submitter": "Chung-Ang university", "gbrs_paired_asm": "GCA_016937515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/937/515/GCF_016937515.1_ASM1693751v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6209985", "genome_size_ungapped": "6209985", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016937515.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5701", "protein_coding_gene_count": "5387", "non_coding_gene_count": "83", "pubmed_id": "28984547" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-24", "dateModified": "2021-02-24", "datePublished": "2021-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella algarum" ], "sample_taxid": [ "2044859" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Chungcheongnam-do" ], "sample_host_location_id": [], "data_size": "1.727 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6209985", "Number of Sequences": "2", "Longest Sequences (bp)": "6194872", "N50 (bp)": "6194872", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.6", "Number of CDSs": "5802", "Average Protein Length": "308.0", "Coding Ratio (%)": "86.3", "Number of rRNAs": "19", "Number of tRNAs": "62", "Number of CRISPRs": "11" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella laeviribosi", "strain": "strain=DSM 21336", "accession": "GCA_000378425.1", "taxid": 380174, "species_taxid": 380174, "relation_to_type": "type", "validated": true, "ani": 81.482, "matched_fragments": 782, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella thermotolerans", "strain": "strain=DSM 17683", "accession": "GCA_000429825.1", "taxid": 329858, "species_taxid": 329858, "relation_to_type": "type", "validated": true, "ani": 79.6278, "matched_fragments": 577, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 79.5604, "matched_fragments": 654, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_017874835.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 79.1353, "matched_fragments": 407, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella zeiphila", "strain": "strain=CBP-2801", "accession": "GCA_014212055.1", "taxid": 2761120, "species_taxid": 2761120, "relation_to_type": "type", "validated": true, "ani": 78.6307, "matched_fragments": 552, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella nanjingensis", "strain": "strain=DSM 28246", "accession": "GCA_014212125.1", "taxid": 1387779, "species_taxid": 1387779, "relation_to_type": "type", "validated": true, "ani": 78.3925, "matched_fragments": 486, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella fermenti", "strain": "strain=CC-MHH1044", "accession": "GCA_004801405.1", "taxid": 2565925, "species_taxid": 2565925, "relation_to_type": "type", "validated": true, "ani": 78.3812, "matched_fragments": 482, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus flagellatus", "strain": "strain=DXL2", "accession": "GCA_003217775.1", "taxid": 2211139, "species_taxid": 2211139, "relation_to_type": "type", "validated": true, "ani": 78.2218, "matched_fragments": 368, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella faecalis", "strain": "strain=K2E09-144", "accession": "GCA_003570905.1", "taxid": 2315694, "species_taxid": 2315694, "relation_to_type": "type", "validated": true, "ani": 77.8731, "matched_fragments": 325, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 77.7879, "matched_fragments": 170, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, "species_taxid": 2726185, "relation_to_type": "type", "validated": true, "ani": 77.7027, "matched_fragments": 312, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus artemisiicola", "strain": "strain=MWE-103", "accession": "GCA_017652985.1", "taxid": 1172618, "species_taxid": 1172618, "relation_to_type": "type", "validated": true, "ani": 77.4374, "matched_fragments": 364, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 76.8924, "matched_fragments": 95, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus montanisoli", "strain": "strain=RA17", "accession": "GCA_003268025.1", "taxid": 2081970, "species_taxid": 2081970, "relation_to_type": "type", "validated": true, "ani": 76.4087, "matched_fragments": 181, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alkaliterrae", "strain": "strain=DSM 17040", "accession": "GCA_021532375.1", "taxid": 320909, "species_taxid": 320909, "relation_to_type": "type", "validated": true, "ani": 76.3616, "matched_fragments": 107, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016937515.1", "gtdb_species": "s__Cohnella algarum", "ani": 100.0, "matched_fragments": 2067, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000378425.1", "gtdb_species": "s__Cohnella laeviribosi", "ani": 81.4818, "matched_fragments": 782, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000429825.1", "gtdb_species": "s__Cohnella thermotolerans", "ani": 79.6022, "matched_fragments": 579, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212175.1", "gtdb_species": "s__Cohnella xylanilytica", "ani": 79.5589, "matched_fragments": 655, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014212015.1", "gtdb_species": "s__Cohnella lubricantis", "ani": 79.1414, "matched_fragments": 407, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014212055.1", "gtdb_species": "s__Cohnella zeiphila", "ani": 78.6459, "matched_fragments": 550, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212125.1", "gtdb_species": "s__Cohnella nanjingensis", "ani": 78.3998, "matched_fragments": 485, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004801405.1", "gtdb_species": "s__Cohnella sp004801405", "ani": 78.3757, "matched_fragments": 482, "total_fragments": 2069, "gtdb_taxonomy": 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