{ "type": "genome", "identifier": "GCF_016937535.1", "organism": "Sulfurospirillum tamanense", "title": "Sulfurospirillum tamanense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center of Biotechnology RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016937535.1", "bioproject": "PRJNA224116", "biosample": "SAMN17977156", "wgs_master": "JAFHKK000000000.1", "refseq_category": "reference genome", "taxid": "2813362", "species_taxid": "2813362", "organism_name": "Sulfurospirillum tamanense", "infraspecific_name": "strain=T05b", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/24", "asm_name": "ASM1693753v1", "asm_submitter": "Research Center of Biotechnology RAS", "gbrs_paired_asm": "GCA_016937535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/937/535/GCF_016937535.1_ASM1693753v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2456696", "genome_size_ungapped": "2456696", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016937535.1-RS_2024_08_25", "annotation_date": "2024-08-25", "total_gene_count": "2535", "protein_coding_gene_count": "2478", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-24", "dateModified": "2021-02-24", "datePublished": "2021-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfurospirillum tamanense" ], "sample_taxid": [ "2813362" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Moscow" ], "sample_host_location_id": [], "data_size": "0.699 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2456696", "Number of Sequences": "63", "Longest Sequences (bp)": "197673", "N50 (bp)": "73734", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.5", "Number of CDSs": "2419", "Average Protein Length": "312.8", "Coding Ratio (%)": "92.4", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurospirillum deleyianum", "strain": "strain=DSM 6946", "accession": "GCA_000024885.1", "taxid": 65553, "species_taxid": 65553, "relation_to_type": "type", "validated": true, "ani": 76.332, "matched_fragments": 58, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurospirillum halorespirans", "strain": "strain=DSM 13726; PCE-M2", "accession": "GCA_001723605.1", "taxid": 194424, "species_taxid": 194424, "relation_to_type": "type", "validated": true, "ani": 76.159, "matched_fragments": 61, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016937535.1", "gtdb_species": "s__Kmv14 sp016937535", "ani": 100.0, "matched_fragments": 785, "total_fragments": 792, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__UBA1877;g__Kmv14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_014859645.1", "gtdb_species": "s__Kmv14 sp014859645", "ani": 85.2645, "matched_fragments": 547, "total_fragments": 792, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__UBA1877;g__Kmv14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000743525.1", "gtdb_species": "s__Sulfurospirillum sp000743525", "ani": 76.4806, "matched_fragments": 64, "total_fragments": 792, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002352945.1", "gtdb_species": "s__UBA1877 sp002352945", "ani": 76.4245, "matched_fragments": 73, "total_fragments": 792, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__UBA1877;g__UBA1877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.488, "cell_length": 0.102, "doubling_h": null, "growth_tmp": 28.777, "optimum_tmp": 27.5, "optimum_ph": 7.183, "genome_size": 2721523.535, "gc_content": 40.519, "coding_genes": 2708.866, "rRNA16S_genes": 2.4, "tRNA_genes": 43.6, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.5, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.5, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.428, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.142, "spiral_cell_shape": 0.428 }, "_genome_taxon": [ "Sulfurospirillum", "tamanense" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }