{
    "type": "genome",
    "identifier": "GCF_016937655.1",
    "organism": "Chromobacterium alkanivorans",
    "title": "Chromobacterium alkanivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016937655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17981208",
        "wgs_master": "JAFHKL000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1071719",
        "species_taxid": "1071719",
        "organism_name": "Chromobacterium alkanivorans",
        "infraspecific_name": "strain=IITR-71",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/24",
        "asm_name": "ASM1693765v1",
        "asm_submitter": "Institute of Microbiology",
        "gbrs_paired_asm": "GCA_016937655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/937/655/GCF_016937655.1_ASM1693765v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5244990",
        "genome_size_ungapped": "5244990",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "59",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016937655.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4842",
        "protein_coding_gene_count": "4743",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-24",
    "dateModified": "2021-02-24",
    "datePublished": "2021-02-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chromobacterium alkanivorans"
        ],
        "sample_taxid": [
            "1071719"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India"
        ],
        "sample_host_location_id": [],
        "data_size": "1.438 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5244990",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "805530",
        "N50 (bp)": "322493",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.7",
        "Number of CDSs": "4732",
        "Average Protein Length": "323.4",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Chromobacterium alkanivorans",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Chromobacterium haemolyticum",
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                "relation_to_type": "type",
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                "ani": 91.9544,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium aquaticum",
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                "species_taxid": 467180,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium violaceum",
                "strain": "strain=ATCC 12472",
                "accession": "GCA_000007705.1",
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                "species_taxid": 536,
                "relation_to_type": "type",
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                "ani": 83.9327,
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                "total_fragments": 1726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium subtsugae",
                "strain": "strain=PRAA4-1",
                "accession": "GCA_001676875.1",
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                "species_taxid": 251747,
                "relation_to_type": "type",
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                "matched_fragments": 988,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium vaccinii",
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                "accession": "GCA_000971335.1",
                "taxid": 1108595,
                "species_taxid": 1108595,
                "relation_to_type": "type",
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                "matched_fragments": 964,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium piscinae",
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                "accession": "GCA_021129175.1",
                "taxid": 686831,
                "species_taxid": 686831,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 929,
                "total_fragments": 1726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium sphagni",
                "strain": "strain=IIBBL 14B-1",
                "accession": "GCA_001855555.1",
                "taxid": 1903179,
                "species_taxid": 1903179,
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                "total_fragments": 1726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium alticapitis",
                "strain": "strain=MWU14-2602",
                "accession": "GCA_002924365.1",
                "taxid": 2073169,
                "species_taxid": 2073169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2676,
                "matched_fragments": 898,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium amazonense",
                "strain": "strain=DSM 26508",
                "accession": "GCA_001855565.1",
                "taxid": 1382803,
                "species_taxid": 1382803,
                "relation_to_type": "type",
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                "ani": 83.2482,
                "matched_fragments": 880,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chromobacterium sinusclupearum",
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                "accession": "GCA_002902845.1",
                "taxid": 2077146,
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                "ani": 83.0607,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter intestini",
                "strain": "strain=GY 70310",
                "accession": "GCA_004919095.1",
                "taxid": 2563443,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9956,
                "matched_fragments": 555,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kingella potus",
                "strain": "strain=NCTC13336",
                "accession": "GCA_900451175.1",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_016937655.1",
                "gtdb_species": "s__Chromobacterium alkanivorans",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium",
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                "mean_intra_species_ani": "98.67",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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            },
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "alkanivorans"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}