{
    "type": "genome",
    "identifier": "GCF_017114865.1",
    "organism": "Streptomyces verrucosisporus",
    "title": "Streptomyces verrucosisporus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017114865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16550995",
        "wgs_master": "JADEYH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1695161",
        "species_taxid": "1695161",
        "organism_name": "Streptomyces verrucosisporus",
        "infraspecific_name": "strain=CPB1-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/01",
        "asm_name": "ASM1711486v1",
        "asm_submitter": "Chulalongkorn University",
        "gbrs_paired_asm": "GCA_017114865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/114/865/GCF_017114865.1_ASM1711486v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6063600",
        "genome_size_ungapped": "6063600",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "105",
        "contig_count": "105",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017114865.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "5581",
        "protein_coding_gene_count": "5373",
        "non_coding_gene_count": "67",
        "pubmed_id": "27306744"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-01",
    "dateModified": "2021-03-01",
    "datePublished": "2021-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces verrucosisporus"
        ],
        "sample_taxid": [
            "1695161"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "1.620 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 6.6,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6063600",
        "Number of Sequences": "105",
        "Longest Sequences (bp)": "621005",
        "N50 (bp)": "171252",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.0",
        "Number of CDSs": "5593",
        "Average Protein Length": "314.8",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces verrucosisporus",
                "strain": "strain=CPB1-1",
                "accession": "GCA_017114865.1",
                "taxid": 1695161,
                "species_taxid": 1695161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1973,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces barkulensis",
                "strain": "strain=RC 1831",
                "accession": "GCA_002843305.1",
                "taxid": 1257026,
                "species_taxid": 1257026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1565,
                "matched_fragments": 1655,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces barkulensis",
                "strain": "strain=RC 1831",
                "accession": "GCA_002811705.2",
                "taxid": 1257026,
                "species_taxid": 1257026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0625,
                "matched_fragments": 1640,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces pini",
                "strain": "strain=PL19",
                "accession": "GCA_900114215.1",
                "taxid": 1520580,
                "species_taxid": 1520580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.9236,
                "matched_fragments": 1662,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces radiopugnans",
                "strain": "strain=CGMCC 4.3519",
                "accession": "GCA_900110735.1",
                "taxid": 403935,
                "species_taxid": 403935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.763,
                "matched_fragments": 1637,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces taklimakanensis",
                "strain": "strain=TRM43335",
                "accession": "GCA_009709575.1",
                "taxid": 2569853,
                "species_taxid": 2569853,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4348,
                "matched_fragments": 1463,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces megasporus",
                "strain": "strain=NRRL B-16372",
                "accession": "GCA_000718985.1",
                "taxid": 44060,
                "species_taxid": 44060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2169,
                "matched_fragments": 1383,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces carminius",
                "strain": "strain=TRM SA0054",
                "accession": "GCA_002794255.1",
                "taxid": 2665496,
                "species_taxid": 2665496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5661,
                "matched_fragments": 1405,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces gobiensis",
                "strain": "strain=1_25",
                "accession": "GCA_021216675.1",
                "taxid": 2875706,
                "species_taxid": 2875706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2865,
                "matched_fragments": 946,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces thermodiastaticus",
                "strain": "strain=DSM 40573",
                "accession": "GCA_021394575.1",
                "taxid": 44061,
                "species_taxid": 44061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1212,
                "matched_fragments": 986,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sennicomposti",
                "strain": "strain=RCPT1-4",
                "accession": "GCA_019890635.1",
                "taxid": 2873384,
                "species_taxid": 2873384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0452,
                "matched_fragments": 1045,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
                "strain": "strain=R7",
                "accession": "GCA_022760195.1",
                "taxid": 132474,
                "species_taxid": 1927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9574,
                "matched_fragments": 1131,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces albus subsp. albus",
                "strain": "strain=NRRL B-1811",
                "accession": "GCA_000725885.1",
                "taxid": 67257,
                "species_taxid": 1888,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.7877,
                "matched_fragments": 1014,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces albus",
                "strain": "strain=NBRC 13014",
                "accession": "GCA_000813365.1",
                "taxid": 1888,
                "species_taxid": 1888,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.7358,
                "matched_fragments": 1030,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces barringtoniae",
                "strain": "strain=JA03",
                "accession": "GCA_020819595.1",
                "taxid": 2892029,
                "species_taxid": 2892029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4899,
                "matched_fragments": 1035,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces xiaopingdaonensis",
                "strain": "strain=DUT 180",
                "accession": "GCA_000262345.1",
                "taxid": 1565415,
                "species_taxid": 1565415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9764,
                "matched_fragments": 815,
                "total_fragments": 1978,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 6.6,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017114865.1",
                "gtdb_species": "s__Streptomyces verrucosisporus",
                "ani": 100.0,
                "matched_fragments": 1973,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.1585,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002843305.1",
                "gtdb_species": "s__Streptomyces barkulensis",
                "ani": 95.1526,
                "matched_fragments": 1656,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.765,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900114215.1",
                "gtdb_species": "s__Streptomyces pini",
                "ani": 94.899,
                "matched_fragments": 1664,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.765,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110735.1",
                "gtdb_species": "s__Streptomyces radiopugnans",
                "ani": 93.7396,
                "matched_fragments": 1639,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009709575.1",
                "gtdb_species": "s__Streptomyces taklimakanensis",
                "ani": 87.4589,
                "matched_fragments": 1459,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000718985.1",
                "gtdb_species": "s__Streptomyces megasporus",
                "ani": 87.2304,
                "matched_fragments": 1382,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002794255.1",
                "gtdb_species": "s__Streptomyces carminius",
                "ani": 86.5907,
                "matched_fragments": 1402,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013302895.1",
                "gtdb_species": "s__Streptomyces chlorinus",
                "ani": 81.0525,
                "matched_fragments": 1048,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000424785.1",
                "gtdb_species": "s__Streptomyces sp000424785",
                "ani": 80.7699,
                "matched_fragments": 999,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000262345.1",
                "gtdb_species": "s__Streptomyces xiaopingdaonensis",
                "ani": 79.9947,
                "matched_fragments": 812,
                "total_fragments": 1978,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.1625,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.757,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "verrucosisporus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}